dataset_key sample_row_count sample_unit_types biological_unit_count patient_or_subject_count organs disease_states disease_details top_disease_state_details counting_note ASD_42288509__MERFISH 71 Sample (71) 0 0 Brain (71) Non-cancer disease (71) Autism spectrum disorder cortical organoid model (71) Non-cancer disease: Autism spectrum disorder cortical organoid model Atera_10xGenomics__Atera 2 Sample (2) 0 0 Breast (1); Uterus/Cervix (1) Primary cancer (2) Breast cancer (ductal carcinoma in situ, HER2-1+) (1); Cervical cancer (squamous cell carcinoma) (1) Primary cancer: Breast cancer (ductal carcinoma in situ, HER2-1+) B-NHL_38379051__PCF_CODEX 35 Sample (35) 0 19 Lymphoid tissue (35) Primary cancer (35) B-cell non-Hodgkin lymphoma (35) Primary cancer: B-cell non-Hodgkin lymphoma BoneMarrow_38714197__PCF_CODEX 32 Region (32) 0 0 Bone marrow (32) Healthy/control (27); Primary cancer (5) Normal/healthy bone marrow control (27); Acute myeloid leukemia (5) Healthy/control: Normal/healthy bone marrow control; Primary cancer: Acute myeloid leukemia BrainTumor_36725935__IMC 393 Sample (393) 0 185 Brain (393) Primary cancer (270); Metastatic cancer (123) Glioblastoma (Primary) (209); Brain metastasis from Lung (53); Brain metastasis from Breast (29); Astrocytoma (Primary) (20); Brain metastasis from Skin (19); Glioblastoma (Recurrent) (16); Glioma, IDH status unknown (Primary) (12); Brain metastasis from Bladder/urinary tract (8); Astrocytoma (Recurrent) (6); Brain metastasis from Ovary/Fallopian tube (6); Brain metastasis from Intestine (5); Brain metastasis from Stomach/upper GI (3); Glioblastoma (Progression from grade II/III) (3); Astrocytoma (Progression from grade II/III) (2); Glioblastoma (Residual) (2) Primary cancer: Glioblastoma (Primary); Metastatic cancer: Brain metastasis from Lung BRCA_31959985__IMC 381 Core (381) 0 0 Breast (376); Liver (5) Primary cancer (289); Healthy/control (92) Breast cancer (289); Normal/healthy breast tissue control (87); Normal/healthy liver control (5) Primary cancer: Breast cancer; Healthy/control: Normal/healthy breast tissue control sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated BRCA_35063072__MIBI_TOF 79 Region (79) 0 70 Breast (79) Primary cancer (70); Healthy/control (9) Breast cancer (ductal carcinoma in situ) (58); Normal/healthy breast tissue control (9); Breast cancer (invasive ductal carcinoma) (8); Breast cancer (invasive lobular carcinoma) (4) Primary cancer: Breast cancer (ductal carcinoma in situ); Healthy/control: Normal/healthy breast tissue control BRCA_35122013__IMC 548 Sample (548) 0 0 Breast (548) Primary cancer (548) Breast cancer (548) Primary cancer: Breast cancer CastlemanDisease_40593805__Xenium 18 Sample (18) 0 0 Lymphoid tissue (18) Non-cancer disease (18) Castleman disease (18) Non-cancer disease: Castleman disease CervicalCancer_CmTSA_41807362__CmTSA 2 Sample (2) 0 0 Uterus/Cervix (2) Primary cancer (2) Cervical cancer (2) Primary cancer: Cervical cancer cHL_41923627__CosMx_SMI 43 FOV (43) 0 0 Lymphoid tissue (43) Primary cancer (43) Classical Hodgkin lymphoma (43) Primary cancer: Classical Hodgkin lymphoma sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated cHL_41923627__MIBI_TOF 9 Acquisition (9) 0 0 Lymphoid tissue (9) Primary cancer (9) Classical Hodgkin lymphoma (9) Primary cancer: Classical Hodgkin lymphoma cHL_41923627__PCF_CODEX 27 Core (27) 0 0 Lymphoid tissue (27) Primary cancer (27) Classical Hodgkin lymphoma (27) Primary cancer: Classical Hodgkin lymphoma sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated CML_41592325__PCF_CODEX 55 Sample (55) 0 0 Bone marrow (55) Primary cancer (55) Chronic myeloid leukemia bone marrow (55) Primary cancer: Chronic myeloid leukemia bone marrow CosMx1k_Bruker__CosMx_SMI 2 Sample (2) 0 0 Liver (2) Healthy/control (1); Primary cancer (1) Hepatocellular carcinoma (1); Normal/healthy liver control (1) Healthy/control: Normal/healthy liver control; Primary cancer: Hepatocellular carcinoma CosMx64_Bruker__CosMx_SMI_protein 2 Sample (2) 0 0 Breast (1); Lymphoid tissue (1) Healthy/control (2) Normal/healthy breast tissue control (1); Normal/healthy tonsil control (1) Healthy/control: Normal/healthy breast tissue control CosMx6k_Bruker__CosMx_SMI 2 Sample (2) 0 0 Brain (1); Lymphoid tissue (1) Healthy/control (2) Normal brain cortex (1); Organ-specific lymph-node control/no cancer (1) Healthy/control: Normal brain cortex CosMxWTx_Bruker__CosMx_SMI 9 Sample (9) 0 0 Pancreas (3); Breast (2); Brain (1); Kidney (1); Large intestine (1); Skin (1) Primary cancer (5); Healthy/control (4) Normal/healthy pancreas control (3); Breast cancer (2); Colorectal cancer (1); Kidney cancer (1); Normal/healthy hippocampus brain tissue (1); Skin cancer (1) Primary cancer: Breast cancer; Healthy/control: Normal/healthy pancreas control CRC_32763154__PCF_CODEX 140 Sample (140) 0 35 Intestine (140) Primary cancer (140) Colorectal cancer (140) Primary cancer: Colorectal cancer CRC_40189697__IMC 170 ROI (170) 170 52 Intestine (170) Primary cancer (170) Colorectal cancer (170) Primary cancer: Colorectal cancer sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated CRC_41986711__CosMx_SMI 352 FOV (352) 0 1 Intestine (352) Primary cancer (352) Colorectal cancer (352) Primary cancer: Colorectal cancer sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated CRC_42167227__CosMx_SMI 14 Sample (14) 0 0 Large intestine (14) Primary cancer (14) Colorectal cancer (14) Primary cancer: Colorectal cancer CutaneousLeishmaniasis_40371647__CosMx_SMI 4 Patient_lesion (4) 4 0 Skin (4) Non-cancer disease (4) Cutaneous leishmaniasis (4) Non-cancer disease: Cutaneous leishmaniasis DevelopingLung_39477961__PCF_CODEX 5 Region (5) 0 0 Lung (5) Healthy/control (5) Developing healthy lung (5) Healthy/control: Developing healthy lung DKD_42056516__CosMx_SMI 48 Sample (48) 0 0 Kidney (48) Non-cancer disease (36); Healthy/control (12) Kidney disease (DKD) (21); Healthy/control kidney (12); Kidney disease (DM) (6); Kidney disease (DM/HTN) (4); Kidney disease (CKD) (1); Kidney disease (DKD+FSGS) (1); Kidney disease (FSGS) (1); Kidney disease (HTN) (1); Kidney disease (TMA) (1) Non-cancer disease: Kidney disease (DKD); Healthy/control: Healthy/control kidney DKD_42056516__Xenium 16 Sample (16) 0 0 Kidney (16) Non-cancer disease (13); Healthy/control (3) Kidney disease (DKD) (8); Healthy/control kidney (3); Kidney disease (AA amyloid) (2); Kidney disease (C3GN) (1); Kidney disease (IgA) (1); Kidney disease (MN) (1) Non-cancer disease: Kidney disease (DKD); Healthy/control: Healthy/control kidney DLBCL_41120574__CosMx_SMI 6 Section (6) 0 0 Lymphoid tissue (6) Primary cancer (6) Diffuse large B-cell lymphoma (6) Primary cancer: Diffuse large B-cell lymphoma DLBCL_41874448__CosMx_SMI 56 Sample (56) 0 0 Lymphoid tissue (56) Primary cancer (56) Diffuse large B-cell lymphoma (56) Primary cancer: Diffuse large B-cell lymphoma DLBCL_41874448__PCF_CODEX 30 Sample (30) 0 0 Lymphoid tissue (30) Primary cancer (30) Diffuse large B-cell lymphoma (30) Primary cancer: Diffuse large B-cell lymphoma GBM_40972572__CosMx_SMI_protein 4 Sample (4) 0 0 Brain (4) Primary cancer (4) Glioblastoma (4) Primary cancer: Glioblastoma HCC_39304772__PCF_CODEX 124 Region (124) 0 0 Liver (124) Primary cancer (124) Hepatocellular carcinoma (124) Primary cancer: Hepatocellular carcinoma HCC_39327501__PCF_CODEX 288 Region (288) 0 0 Liver (288) Primary cancer (288) Hepatocellular carcinoma (288) Primary cancer: Hepatocellular carcinoma HCC_39455893__IMC 38 TLS_region (38) 0 0 Liver (38) Primary cancer (38) Hepatocellular carcinoma (38) Primary cancer: Hepatocellular carcinoma HCC_39965889__PCF_CODEX 31 Core (31) 0 0 Liver (31) Primary cancer (31) Hepatocellular carcinoma (31) Primary cancer: Hepatocellular carcinoma sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated HCC_41723121__CosMx_SMI 9 Sample (9) 9 4 Liver (9) Primary cancer (9) Hepatocellular carcinoma (9) Primary cancer: Hepatocellular carcinoma HGSC_39179931__CosMx_SMI 166 Sample (166) 166 91 Ovary/Fallopian tube (166) Primary cancer (166) High-grade serous carcinoma (166) Primary cancer: High-grade serous carcinoma HGSC_39179931__MERFISH 4 Sample (4) 4 4 Ovary/Fallopian tube (4) Primary cancer (4) High-grade serous carcinoma (4) Primary cancer: High-grade serous carcinoma HGSC_39179931__Xenium 32 Sample (32) 32 12 Ovary/Fallopian tube (32) Primary cancer (32) High-grade serous carcinoma (32) Primary cancer: High-grade serous carcinoma HGSOC_38570491__CosMx_SMI 1 FOV (1) 0 0 Ovary (1) Primary cancer (1) High-grade serous carcinoma (1) Primary cancer: High-grade serous carcinoma sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated HNSCC_41616773__Other_ST 137 Sample (137) 0 0 Lymphoid tissue (137) Primary cancer (73); Metastatic cancer (46); Healthy/control (18) Head and neck squamous cell carcinoma (73); Lymphoid tissue metastasis from Oral cavity (46); Organ-specific lymph-node control/no cancer (18) Primary cancer: Head and neck squamous cell carcinoma; Metastatic cancer: Lymphoid tissue metastasis from Oral cavity; Healthy/control: Organ-specific lymph-node control/no cancer HNSCC_41616773__PCF_CODEX 475 Sample (475) 0 0 Lymphoid tissue (275); Oral cavity (200) Primary cancer (204); Metastatic cancer (148); Healthy/control (123) Head and neck squamous cell carcinoma (204); Lymphoid tissue metastasis from Oral cavity (148); Organ-specific lymph-node control/no cancer (123) Primary cancer: Head and neck squamous cell carcinoma; Metastatic cancer: Lymphoid tissue metastasis from Oral cavity; Healthy/control: Organ-specific lymph-node control/no cancer HNSCCDiscovery_41616773__PCF_CODEX 390 Sample (390) 0 0 Lymphoid tissue (201); Oral cavity (189) Primary cancer (189); Metastatic cancer (138); Healthy/control (63) Head and neck squamous cell carcinoma (189); Lymphoid tissue metastasis from Oral cavity (138); Organ-specific lymph-node control/no cancer (63) Primary cancer: Head and neck squamous cell carcinoma; Metastatic cancer: Lymphoid tissue metastasis from Oral cavity; Healthy/control: Organ-specific lymph-node control/no cancer HNSCCHealthyLN_41616773__PCF_CODEX 51 Sample (51) 0 0 Lymphoid tissue (51) Healthy/control (51) Organ-specific lymph-node control/no cancer (51) Healthy/control: Organ-specific lymph-node control/no cancer HNSCCValidation_41616773__PCF_CODEX 34 Sample (34) 0 0 Lymphoid tissue (23); Oral cavity (11) Primary cancer (15); Metastatic cancer (10); Healthy/control (9) Head and neck squamous cell carcinoma (15); Lymphoid tissue metastasis from Oral cavity (10); Organ-specific lymph-node control/no cancer (9) Primary cancer: Head and neck squamous cell carcinoma; Metastatic cancer: Lymphoid tissue metastasis from Oral cavity; Healthy/control: Organ-specific lymph-node control/no cancer IBD_42049732__CosMx_SMI 34 FOV (34) 1 0 Intestine (34) Non-cancer disease (34) Inflammatory bowel disease (34) Non-cancer disease: Inflammatory bowel disease sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated ICC_41723121__CosMx_SMI 6 Sample (6) 6 3 Liver (6) Primary cancer (6) Intrahepatic cholangiocarcinoma (6) Primary cancer: Intrahepatic cholangiocarcinoma IgAN_38898271__Xenium 1 Sample (1) 0 0 Kidney (1) Non-cancer disease (1) IgA nephropathy (1) Non-cancer disease: IgA nephropathy Intestine_37468586__PCF_CODEX 66 Region (66) 0 0 Small intestine (39); Large intestine (27) Healthy/control (66) Healthy adult human intestine (66) Healthy/control: Healthy adult human intestine Intestine_39843748__MERFISH 2 Sample (2) 0 0 Intestine (2) Healthy/control (2) Healthy intestine (2) Healthy/control: Healthy intestine Intestine_39843748__Xenium 16 Sample (16) 0 0 Intestine (16) Healthy/control (16) Healthy intestine (16) Healthy/control: Healthy intestine Liver_41986723__MERFISH 2 Section (2) 0 0 Liver (2) Healthy/control (2) Normal/healthy liver control (2) Healthy/control: Normal/healthy liver control LiverCancer_41723121__CosMx_SMI 15 Sample (15) 15 7 Liver (15) Primary cancer (15) Hepatocellular carcinoma (9); Intrahepatic cholangiocarcinoma (6) Primary cancer: Hepatocellular carcinoma LUAD_36725934__IMC 416 Sample (416) 0 0 Lung (416) Primary cancer (416) Lung adenocarcinoma (416) Primary cancer: Lung adenocarcinoma Melanoma_35363543__IMC 72 Sample (72) 0 0 Skin (66); Intestine (5); Bone marrow (1) Primary cancer (31); Metastatic cancer (29); Healthy/control (12) Melanoma (31); Lymphoid tissue metastasis (13); Melanocytic nevus / non-malignant skin control (12); Lymphoid tissue metastasis from extremity (3); Brain metastasis (2); Lymphoid tissue metastasis from trunk (2); Skin metastasis from head/neck (2); Brain metastasis from extremity (1); Brain metastasis from trunk (1); Lymphoid tissue metastasis from acral (1); Lymphoid tissue metastasis from head/neck (1); Skin metastasis (1); Skin metastasis from extremity (1); Skin metastasis from trunk (1) Primary cancer: Melanoma; Metastatic cancer: Lymphoid tissue metastasis; Healthy/control: Melanocytic nevus / non-malignant skin control Melanoma_40148341__CosMx_SMI 25 Sample (25) 1 0 Skin (25) Primary cancer (25) Melanoma (25) Primary cancer: Melanoma Melanoma_40457060__CosMx_SMI 2 Sample (2) 1 0 Skin (2) Primary cancer (2) Melanoma (2) Primary cancer: Melanoma Melanoma_41916292__CyCIF 31 ROI (31) 0 0 Skin (31) Primary cancer (31) Melanoma (31) Primary cancer: Melanoma sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated MERFISH_500_Vizgen__MERFISH 18 Sample (18) 0 0 Ovary (4); Uterus/Cervix (3); Large intestine (2); Liver (2); Lung (2); Prostate (2); Skin (2); Breast (1) Primary cancer (18) Ovarian cancer (4); Uterine cancer (3); Colorectal cancer (2); Hepatocellular carcinoma (2); Lung cancer (2); Melanoma (2); Prostate cancer (2); Breast cancer (1) Primary cancer: Ovarian cancer MERFISH_815_Vizgen__MERFISH 6 Sample (6) 0 0 Breast (5); Large intestine (1) Primary cancer (6) Breast cancer (5); Colorectal cancer (1) Primary cancer: Breast cancer MERFISH_960_Vizgen__MERFISH 3 Sample (3) 0 0 Brain (3) Non-cancer disease (2); Healthy/control (1) Alzheimer's disease (2); Normal brain cortex (1) Non-cancer disease: Alzheimer's disease; Healthy/control: Normal brain cortex MIBC_42126225__Xenium 5 Sample (5) 0 0 Bladder (5) Primary cancer (5) Muscle-invasive bladder cancer (5) Primary cancer: Muscle-invasive bladder cancer Neocortex_39779846__MERFISH 6 Section (6) 0 0 Brain (6) Healthy/control (6) Normal developing human neocortex (6) Healthy/control: Normal developing human neocortex Neuroblastoma_41918107__PCF_CODEX 24 Core (24) 0 24 Adrenal gland / sympathetic nervous system (24) Primary cancer (24) Neuroblastoma (24) Primary cancer: Neuroblastoma sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated NormalSkin_41872488__MERFISH 114 Sample (114) 0 22 Skin (114) Healthy/control (114) Healthy/normal skin (114) Healthy/control: Healthy/normal skin NSCLC_38242124__IMC 2070 ROI core (2070) 0 1071 Lung (2070) Primary cancer (2070) Non-small cell lung cancer (1104); Lung adenocarcinoma (822); Lung squamous cell carcinoma (63); Adenosquamous lung carcinoma (60); Large-cell/other non-small cell lung cancer (15); Other non-small cell lung cancer (6) Primary cancer: Non-small cell lung cancer NSCLC_40220761__CosMx_SMI 6 Section (6) 0 0 Lung (6) Primary cancer (6) Non-small cell lung cancer (6) Primary cancer: Non-small cell lung cancer NSCLC_40408481__PCF_CODEX 257 Sample (257) 0 50 Lung (257) Primary cancer (257) Lung adenocarcinoma (174); Lung squamous cell carcinoma (74); Other non-small cell lung cancer (7); Non-small cell lung cancer (2) Primary cancer: Lung adenocarcinoma Oral_41663813__Xenium 44 Sample (44) 0 0 Head and neck (44) Non-cancer disease (29); Healthy/control (15) Periodontitis (29); Oral health (15) Non-cancer disease: Periodontitis; Healthy/control: Oral health OSCC_41707652__IMC 92 ROI (92) 0 0 Oral cavity (92) Primary cancer (92) Oral squamous cell carcinoma (92) Primary cancer: Oral squamous cell carcinoma sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated PDAC_39227743__CosMx_SMI 16 Sample (16) 0 0 Pancreas (16) Primary cancer (16) Pancreatic ductal adenocarcinoma (16) Primary cancer: Pancreatic ductal adenocarcinoma PDAC_40269162__CosMx_SMI 90 FOV (90) 2 0 Pancreas (90) Primary cancer (90) Pancreatic ductal adenocarcinoma (90) Primary cancer: Pancreatic ductal adenocarcinoma sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated PDAC_41916312__Xenium 1 Sample (1) 0 0 Pancreas (1) Primary cancer (1) Pancreatic ductal adenocarcinoma (1) Primary cancer: Pancreatic ductal adenocarcinoma PulmonaryFibrosis_39901013__Xenium 45 Punch (45) 0 35 Lung (45) Non-cancer disease (35); Healthy/control (10) Pulmonary fibrosis / interstitial lung disease (IPF) (16); Healthy/control lung (10); Pulmonary fibrosis / interstitial lung disease (ILD) (6); Pulmonary fibrosis / interstitial lung disease (cHP) (4); Pulmonary fibrosis / interstitial lung disease (CTD-ILD) (2); Pulmonary fibrosis / interstitial lung disease (IPAF) (2); Pulmonary fibrosis / interstitial lung disease (NSIP) (2); Pulmonary fibrosis / interstitial lung disease (Sarcoidosis) (2); Pulmonary fibrosis / interstitial lung disease (CPFE) (1) Non-cancer disease: Pulmonary fibrosis / interstitial lung disease (IPF); Healthy/control: Healthy/control lung RheumatoidArthritis_39609125__CosMx_SMI 60 FOV (60) 0 0 Musculoskeletal (60) Non-cancer disease (60) Rheumatoid arthritis (active) (36); Rheumatoid arthritis (remission) (24) Non-cancer disease: Rheumatoid arthritis (active) sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated SCN_41720090__MERFISH 1 Sample (1) 0 0 Brain (1) Healthy/control (1) Normal/healthy suprachiasmatic nucleus brain tissue (1) Healthy/control: Normal/healthy suprachiasmatic nucleus brain tissue SCN_41720090__Visium 5 Sample (5) 0 0 Brain (5) Healthy/control (5) Normal/healthy suprachiasmatic nucleus brain tissue (5) Healthy/control: Normal/healthy suprachiasmatic nucleus brain tissue SCN_41720090__Visium_HD 1 Sample (1) 0 0 Brain (1) Healthy/control (1) Normal/healthy suprachiasmatic nucleus brain tissue (1) Healthy/control: Normal/healthy suprachiasmatic nucleus brain tissue SPATCH_41107232__CosMx_SMI 3 Sample (3) 0 0 Intestine (1); Liver (1); Ovary/Fallopian tube (1) Primary cancer (3) Colorectal cancer (adenocarcinoma) (1); Hepatocellular carcinoma (1); Ovarian cancer (1) Primary cancer: Colorectal cancer (adenocarcinoma) SPATCH_41107232__PCF_CODEX 9 Sample (9) 0 0 Intestine (3); Liver (3); Ovary/Fallopian tube (3) Primary cancer (9) Colorectal cancer (adenocarcinoma) (3); Hepatocellular carcinoma (3); Ovarian cancer (3) Primary cancer: Colorectal cancer (adenocarcinoma) SPATCH_41107232__Stereo_seq 3 Sample (3) 0 0 Intestine (1); Liver (1); Ovary/Fallopian tube (1) Primary cancer (3) Colorectal cancer (adenocarcinoma) (1); Hepatocellular carcinoma (1); Ovarian cancer (1) Primary cancer: Colorectal cancer (adenocarcinoma) SPATCH_41107232__Xenium 3 Sample (3) 0 0 Intestine (1); Liver (1); Ovary/Fallopian tube (1) Primary cancer (3) Colorectal cancer (adenocarcinoma) (1); Hepatocellular carcinoma (1); Ovarian cancer (1) Primary cancer: Colorectal cancer (adenocarcinoma) SpinalCord_38513664__ISS 52 Sample (52) 0 0 Spinal cord (52) Non-cancer disease (52) Experimental autoimmune encephalomyelitis (multiple sclerosis model) (52) Non-cancer disease: Experimental autoimmune encephalomyelitis (multiple sclerosis model) SpinalCord_38513664__Xenium 6 Sample (6) 0 0 Spinal cord (6) Non-cancer disease (4); Healthy/control (2) Multiple sclerosis (4); Organ-specific spinal-cord control/no cancer (2) Non-cancer disease: Multiple sclerosis; Healthy/control: Organ-specific spinal-cord control/no cancer TNBC_38194915__PCF_CODEX 27 Sample (27) 0 12 Breast (27) Primary cancer (27) Triple-negative breast cancer (27) Primary cancer: Triple-negative breast cancer UlcerativeColitis_38374043__CosMx_SMI 90 FOV (90) 42 29 Intestine (90) Non-cancer disease (59); Healthy/control (31) Healthy colon control (31); Ulcerative colitis (pre-vedolizumab, responder) (25); Ulcerative colitis (post-vedolizumab, responder) (10); Ulcerative colitis (post-vedolizumab, non-responder) (8); Ulcerative colitis (pre-vedolizumab, non-responder) (7); Ulcerative colitis (vedolizumab-treated) (5); Ulcerative colitis (4) Non-cancer disease: Ulcerative colitis (pre-vedolizumab, responder); Healthy/control: Healthy colon control combined UC CosMx release overlaps Run1 and Run2 split datasets; do not add all three for independent biological counts UlcerativeColitisRun1_38374043__CosMx_SMI 17 FOV (17) 16 10 Intestine (17) Non-cancer disease (9); Healthy/control (8) Healthy colon control (8); Ulcerative colitis (vedolizumab-treated) (5); Ulcerative colitis (4) Non-cancer disease: Ulcerative colitis (vedolizumab-treated); Healthy/control: Healthy colon control sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated UlcerativeColitisRun2_38374043__CosMx_SMI 73 FOV (73) 26 19 Intestine (73) Non-cancer disease (50); Healthy/control (23) Ulcerative colitis (pre-vedolizumab, responder) (25); Healthy colon control (23); Ulcerative colitis (post-vedolizumab, responder) (10); Ulcerative colitis (post-vedolizumab, non-responder) (8); Ulcerative colitis (pre-vedolizumab, non-responder) (7) Non-cancer disease: Ulcerative colitis (pre-vedolizumab, responder); Healthy/control: Healthy colon control sample_rows are image/FOV/core-level rows; use biological_unit_count/patient_or_subject_count for biological sample interpretation where populated Visium_HD_10xGenomics__Visium_HD 24 Slide (24) 0 0 Large intestine (5); Lung (5); Ovary (5); Breast (3); Lymphoid tissue (2); Pancreas (2); Kidney (1); Prostate (1) Primary cancer (20); Healthy/control (4) Colorectal cancer (adenocarcinoma) (5); Lung cancer (invasive acinar adenocarcinoma) (4); Ovarian cancer (papillary serous carcinoma) (4); Healthy human (3); Breast cancer (1); Breast cancer (ductal carcinoma in situ) (1); Breast cancer (invasive ductal carcinoma) (1); Lung adenocarcinoma (1); Ovarian cancer (clear cell adenocarcinoma) (1); Pancreatic cancer (1); Prostate cancer (adenocarcinoma) (1); Reactive Follicular Hyperplasia (1) Primary cancer: Colorectal cancer (adenocarcinoma); Healthy/control: Healthy human VisiumHD_p2_TissueArray__Visium_HD 3 tumor array region (3) 0 0 Breast (1); Colon (1); Lung (1) Primary cancer (3) Breast cancer (invasive ductal carcinoma) (1); Colorectal cancer (adenocarcinoma) (1); Non-small cell lung cancer (1) Primary cancer: Breast cancer (invasive ductal carcinoma) VisiumHD_p2_TMA__Visium_HD 36 TMA core (36) 0 0 Breast (36) Primary cancer (36) Breast cancer (36) Primary cancer: Breast cancer VisiumHD_p2_WholeSlide__Visium_HD 3 whole-slide section (3) 0 0 Colon (2); Heart (1) Primary cancer (2); Healthy/control (1) Colorectal cancer (2); Normal/healthy heart control (1) Primary cancer: Colorectal cancer; Healthy/control: Normal/healthy heart control Xenium5k_10xGenomics__Xenium 9 Slide (9) 0 0 Ovary (3); Breast (1); Lung (1); Lymphoid tissue (1); Prostate (1); Skin (1); Uterus/Cervix (1) Primary cancer (8); Non-cancer disease (1) Ovarian cancer (papillary serous carcinoma) (2); Breast cancer (1); Cervical Cancer (1); Lung cancer (invasive acinar adenocarcinoma) (1); Melanoma (1); Ovarian cancer (adenocarcinoma) (1); Prostate cancer (adenocarcinoma) (1); Reactive lymph node (1) Primary cancer: Ovarian cancer (papillary serous carcinoma); Non-cancer disease: Reactive lymph node XeniumBrain_10xGenomics__Xenium 3 Sample (3) 0 0 Brain (3) Healthy/control (1); Non-cancer disease (1); Primary cancer (1) Alzheimer's disease (1); Glioblastoma (1); Healthy human (1) Healthy/control: Healthy human; Non-cancer disease: Alzheimer's disease; Primary cancer: Glioblastoma XeniumBreast_10xGenomics__Xenium 6 Sample (6) 0 0 Breast (6) Primary cancer (6) Breast cancer (invasive ductal carcinoma) (2); Breast cancer (invasive ductal carcinoma, ductal carcinoma in situ) (2); Breast cancer (invasive lobular carcinoma) (2) Primary cancer: Breast cancer (invasive ductal carcinoma) XeniumBreastJanesick_10xGenomics__Xenium 12 Sample (12) 0 0 Breast (12) Primary cancer (11); Healthy/control (1) Breast cancer (DCIS, ER+/PR+/HER2-2+) (2); Breast cancer (DCIS, HER2-1+) (2); Breast cancer (CCH/DCIS, ER+/PR+/HER2-1+) (1); Breast cancer (DCIS, ER-/PR-/HER2-2+) (1); Breast cancer (DCIS, HER2-2+) (1); Breast cancer (DCIS, HER2-3+) (1); Breast cancer (IDC, ER+/PR+/HER2-1+) (1); Breast cancer (IDC, ER+/PR+/HER2-2+) (1); Breast cancer (IDC, HER2-) (1); Healthy human (1) Primary cancer: Breast cancer (DCIS, ER+/PR+/HER2-2+); Healthy/control: Healthy human XeniumImmune_10xGenomics__Xenium 5 Sample (5) 0 0 Brain (1); Colon (1); Lung (1); Ovary (1); Pancreas (1) Primary cancer (5) Colorectal cancer (adenocarcinoma) (1); Glioblastoma (1); High-grade serous carcinoma (1); Non-small cell lung cancer (1); Pancreatic ductal adenocarcinoma (1) Primary cancer: Colorectal cancer (adenocarcinoma) XeniumLung_10xGenomics__Xenium 3 Sample (3) 0 0 Lung (3) Primary cancer (2); Healthy/control (1) Healthy human (1); Lung cancer (invasive acinar adenocarcinoma) (1); Lung cancer (invasive adenocarcinoma) (1) Primary cancer: Lung cancer (invasive acinar adenocarcinoma); Healthy/control: Healthy human XeniumMulti_10xGenomics__Xenium 20 Sample (20) 0 0 Kidney (3); Pancreas (3); Bone Marrow (2); Liver (2); Lung (2); Skin (2); Tonsil (2); Femur Bone (1); Heart (1); Lymph Node (1); Ovary (1) Healthy/control (9); Primary cancer (9); Non-cancer disease (2) Healthy human (8); Lung cancer (2); Pancreatic ductal adenocarcinoma (2); Acute lymphoid leukemia (1); Follicular lymphoid hyperplasia (1); Hepatocellular carcinoma (1); Kidney cancer (papillary renal cell carcinoma) (1); Kidney cancer (renal cell carcinoma) (1); Normal/healthy kidney control (1); Ovarian cancer (papillary serous carcinoma) (1); Reactive follicular hyperplasia (1) Healthy/control: Healthy human; Primary cancer: Lung cancer; Non-cancer disease: Follicular lymphoid hyperplasia