scAtria single-cell spatial atlas resource

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? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
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10 Datasets
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Organ: Brain × Curated only × 10 matches 10 curated
Dataset Organs ?For mixed datasets, fractions show sample counts per organ. Disease state Technique Samples Cells Spatial module Curation
BrainTumor_36725935 · IMC / Imaging Mass Cytometry
BrainTumor_36725935__IMC
Brain 393
Primary cancer 270/393 Metastatic cancer 123/393
IMC 393 1,163,362
377/393
 Curated
Bruker CosMx 6k FFPE showcase
CosMx6k_Bruker__CosMx_SMI
Brain 1/2 Lymphoid tissue 1/2
Healthy/control 2
CosMx 2 2,041,632
0/2
 Curated
Bruker CosMx WTx FFPE showcase
CosMxWTx_Bruker__CosMx_SMI
Brain 1/9 Breast 2/9 Kidney 1/9 Large intestine 1/9 Pancreas 3/9 Skin 1/9
Primary cancer 5/9 Healthy/control 4/9
CosMx 9 2,878,028
0/9
 Curated
MERFISH 960-plex Vizgen showcase
MERFISH_960_Vizgen__MERFISH
Brain 3
Non-cancer disease 2/3 Healthy/control 1/3
MERFISH 3 394,181
0/3
 Curated
Melanoma_35363543 · IMC / Imaging Mass Cytometry
Melanoma_35363543__IMC
Bone marrow 1/72 Brain 4/72 Large intestine 5/72 Lymph node metastasis 20/72 Skin 42/72
Primary cancer 31/72 Metastatic cancer 29/72 Healthy/control 12/72
IMC 72 272,135
72/72
 Curated
Neocortex_39779846 · MERFISH / MERSCOPE
Neocortex_39779846__MERFISH
Brain 6
Healthy/control 6
MERFISH 6 404,030
0/6
 Curated
SCN_41720090 · MERFISH / MERSCOPE
SCN_41720090__MERFISH
Brain 1
Healthy/control 1
MERFISH 1 6,953
0/1
 Curated
SCN_41720090 · Visium HD
SCN_41720090__Visium_HD
Brain 1
Healthy/control 1
Visium HD 1 16,123
0/1
 Curated
Xenium Human Brain Gene Expression Panel showcase
XeniumBrain_10xGenomics__Xenium
Brain 3
Healthy/control 1/3 Non-cancer disease 1/3 Primary cancer 1/3
Xenium 3 110,248
0/3
 Curated
Xenium Human Immuno-Oncology Profiling Panel showcase
XeniumImmune_10xGenomics__Xenium
Brain 1/5 Large intestine 1/5 Lung 1/5 Ovary 1/5 Pancreas 1/5
Primary cancer 5
Xenium 5 1,848,679
0/5
 Curated