scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 847 matches · sample view
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Customized columns 7
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Organ: Lung × Curated only × 847 matches 847 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Lung_Cancer 10x Genomics Visium HD p2 TissueArray showcase Lung Primary cancer Visium HD 113,248 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 285,367 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 149,347 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 165,128 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 155,513 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 159,463 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE 10x Genomics Xenium Prime 5K showcase Lung Primary cancer Xenium 278,328 Curated
LUAD_36725934__IMC__LUAD_D001 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,517 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D002 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,134 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D003 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,344 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D004 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,241 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D005 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,303 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D006 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,094 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D007 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,318 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D008 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,911 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D009 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,696 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D010 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,064 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D011 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,822 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D012 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,363 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D013 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,362 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D014 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,035 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D015 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 610 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D016 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,780 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D017 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,409 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D018 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,106 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D019 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,450 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D020 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 1,139 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D021 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,725 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D022 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,911 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D023 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 6,422 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D024 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,365 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D025 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,649 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D026 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,675 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D027 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,159 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D028 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,417 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D029 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,292 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D030 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,398 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D031 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,174 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D032 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,020 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D033 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,922 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D034 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,288 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D035 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,437 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D036 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,681 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D037 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 3,471 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D038 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 7,375 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D039 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,550 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D040 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 5,927 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D041 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,778 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D042 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 2,795 T1T2T3T1T2T3T1T2T3 Curated
LUAD_36725934__IMC__LUAD_D043 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 4,594 T1T2T3T1T2T3T1T2T3 Curated