scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,508 Samples
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,508 matches · sample view
Reset
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
Curated only × 7,508 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP41_114_X14Y4__gate010 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 324 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_117_X13Y3__gate006 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,572 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_117_X14Y3__gate011 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 223 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_11_X13Y7__gate031 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,565 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_126_X14Y7__gate034 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,892 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_129_X7Y8__gate046 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,751 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_133_X3Y6__gate114 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,151 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_134_X3Y8__gate112 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,211 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_135_X8Y5__gate068 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,376 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_141_X11Y2__gate026 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,662 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_141_X12Y2__gate002 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 680 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_14_X1Y8__gate115 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,401 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_153_X7Y5__gate063 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,325 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_159_X11Y4__gate083 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 309 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_159_X12Y4__gate029 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,515 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_165_X5Y6__gate121 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,708 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_166_X15Y4__gate015 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,066 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y4__gate019 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 587 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y4__gate020 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 669 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_177_X16Y5__gate021 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,723 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_186_X5Y4__gate096 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,923 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_186_X6Y4__gate100 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,965 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_187_X3Y2__gate091 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 194 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_187_X4Y2__gate095 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 62 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_18_X13Y5__gate004 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,851 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_191_X15Y7__gate036 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,544 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_196_X5Y7__gate119 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,392 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_203_X8Y8__gate049 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,771 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_206_X1Y2__gate105 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,389 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_206_X2Y2__gate088 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,853 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_20_X12Y5__gate028 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 399 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_211_X4Y6__gate117 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,284 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_212_X1Y9__gate125 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,203 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_214_X15Y6__gate037 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,123 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_216_X1Y6__gate122 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,422 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X10Y4__gate077 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,554 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X10Y4__gate104 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,468 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X9Y4__gate073 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 85 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_218_X9Y4__gate103 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,580 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_219_X8Y7__gate050 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,755 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_220_X10Y5__gate076 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,569 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_224_X3Y7__gate113 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,593 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_227_X9Y6__gate054 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,631 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_228_X7Y3__gate065 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 263 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate045 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 842 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_231_X6Y6__gate061 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,602 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_234_X10Y6__gate057 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,319 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_237_X16Y6__gate039 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,765 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_238_X7Y1__gate067 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,106 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_238_X8Y1__gate071 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,047 T1T2T3T1T2T3T1T2T3 Curated