scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,508 matches · sample view
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Curated only × 7,508 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP41_61_X3Y4__gate089 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,939 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_61_X4Y4__gate093 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 58 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_62_X7Y7__gate047 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,929 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_63_X4Y9__gate126 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,335 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_68_X10Y1__gate081 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 294 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_68_X9Y1__gate075 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,239 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_69_X5Y3__gate097 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,147 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_72_X11Y1__gate027 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,709 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_72_X12Y1__gate003 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 475 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_7_X5Y1__gate099 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,839 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_83_X13Y2__gate007 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,354 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_83_X14Y2__gate012 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,042 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_86_X15Y3__gate016 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,890 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_88_X11Y5__gate024 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,204 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_88_X11Y5__gate082 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,713 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_8_X5Y9__gate127 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,996 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_92_X12Y7__gate041 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,533 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_9_X6Y9__gate128 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,695 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_0_X2Y1__gate251 BRCA_31959985 · IMC / Imaging Mass Cytometry Liver Healthy/control IMC 2,129 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_105_X10Y1__gate182 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,304 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_105_X9Y1__gate177 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 392 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_109_X10Y6__gate162 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,570 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_10_X1Y5__gate236 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,426 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_113_X2Y5__gate222 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,221 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_120_X5Y2__gate206 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,230 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_120_X6Y2__gate210 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 807 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_121_X11Y8__gate164 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,312 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_123_X8Y6__gate202 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 374 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_127_X2Y8__gate219 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 6,845 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_12_X12Y8__gate168 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 921 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_130_X1Y6__gate235 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_136_X10Y4__gate179 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 968 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_136_X9Y4__gate178 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,180 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_138_X3Y5__gate228 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,798 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_13_X5Y8__gate188 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,901 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_145_X1Y4__gate248 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,361 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_145_X2Y4__gate237 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 55 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_145_X2Y4__gate238 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 25 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_146_X16Y6__gate142 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_148_X5Y6__gate190 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,821 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_151_X14Y7__gate134 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,006 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_152_X15Y6__gate138 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,518 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_154_X7Y4__gate212 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,277 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_154_X8Y4__gate215 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 645 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_155_X4Y9__gate229 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,585 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_156_X15Y1__gate154 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 342 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_156_X16Y1__gate155 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 692 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_158_X12Y6__gate170 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,213 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_160_X13Y5__gate132 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,045 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_161_X13Y3__gate144 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,899 T1T2T3T1T2T3T1T2T3 Curated