scAtria single-cell spatial atlas resource

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7,508 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Sample Organ Disease state Technique Cells Spatial module Curation
OSCC_41707652__IMC__83 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,771 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__84 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,950 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__85 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,422 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__86 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 11,270 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__87 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,560 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__88 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,242 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__89 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,774 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__9 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,176 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__90 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,927 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__91 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,579 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__92 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,883 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__93 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,706 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__94 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,751 T1T2T3T1T2T3T1T2T3 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 31,084 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,658 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 33,800 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 55,369 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 42,432 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,794 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T6-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 12,473 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 24,894 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 34,334 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 15,019 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U4-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 47,432 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 46,798 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 74,793 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U6-a_1 PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 72,318 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U6-a_2 PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 68,410 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U7-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 70,885 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Distant_PDAC_Slide1_38 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 920 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Distant_PDAC_Slide1_39 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,086 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Distant_PDAC_Slide1_40 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 997 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_33 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 800 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_34 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 768 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_35 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 750 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_36 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 918 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_37 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 647 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_44 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 734 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_28 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_29 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 758 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_30 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 423 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_31 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 256 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_32 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_45 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 565 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_25 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_26 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 308 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_27 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 576 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_20 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,145 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_21 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 757 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_22 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,120 T1T2T3T1T2T3T1T2T3 Curated