scAtria single-cell spatial atlas resource

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7,487 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Sample Organ Disease state Technique Cells Spatial module Curation
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 264,005 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 165,142 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 141,376 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 325,192 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 266,625 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 132,648 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 263,757 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_COAD SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Large intestine Primary cancer Stereo 361,260 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_HCC SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Liver Primary cancer Stereo 390,774 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_OV SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Ovary Primary cancer Stereo 319,366 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_COAD SPATCH_41107232 · Xenium Large intestine Primary cancer Xenium 405,927 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_HCC SPATCH_41107232 · Xenium Liver Primary cancer Xenium 271,687 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_OV SPATCH_41107232 · Xenium Ovary Primary cancer Xenium 410,193 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_C_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,120 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_C_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,800 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_C_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,851 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_L_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,584 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,782 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_L_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,509 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_B_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 29,500 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_B_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 36,918 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_B_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 33,728 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_B_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 52,884 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_C_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,586 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_C_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,562 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_C_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,865 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_C_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,669 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_L_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,499 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,701 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_L_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,978 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_L_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,335 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_T_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 3,776 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_T_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 2,461 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_T_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 2,469 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_T_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 3,217 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_NS_L_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,281 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_NS_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,554 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_NS_L_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,898 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_NS_L_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,912 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_SO_L_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,100 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_SO_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,875 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_SO_L_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,919 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_EARLY_SO_L_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,731 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_C_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 9,804 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_C_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 7,766 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_C_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 8,832 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_L_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,525 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,270 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_LATE_L_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,758 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__EAE_PEAK_B_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 34,541 Curated