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single-cell spatial atlas resource
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Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset
Sample
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Table
7,487 Samples
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Study ID
HNSCC_41616773
Modality
Spatial transcriptomics
Technique
Xenium
Organ
breast
Disease state
primary cancer
Disease detail
breast cancer
Filter scope
7,487 matches · sample view
Applied
Dataset
ASD_42288509 · MERFISH / MERSCOPE
10x Genomics Atera showcase
B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion
BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion
BrainTumor_36725935 · IMC / Imaging Mass Cytometry
BRCA_31959985 · IMC / Imaging Mass Cytometry
BRCA_35063072 · MIBI-TOF / Multiplexed Ion Beam Imaging
BRCA_35122013 · IMC / Imaging Mass Cytometry
CastlemanDisease_40593805 · Xenium
CervicalCancer_CmTSA_41807362
cHL_41923627 · CosMx SMI / NanoString SMI
cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging
cHL_41923627 · PCF / CODEX / PhenoCycler Fusion
CML_41592325 · PCF / CODEX / PhenoCycler Fusion
Bruker CosMx 1k FFPE showcase
Bruker CosMx 64-protein FFPE showcase
Bruker CosMx 6k FFPE showcase
Bruker CosMx WTx FFPE showcase
CRC_32763154 · PCF / CODEX / PhenoCycler Fusion
CRC_40189697 · IMC / Imaging Mass Cytometry
CRC_41986711 · CosMx SMI / NanoString SMI
CRC_42167227 · CosMx SMI / NanoString SMI
CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI
DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion
DKD_42056516 · CosMx SMI / NanoString SMI
DKD_42056516 · Xenium
DLBCL_41120574 · CosMx SMI / NanoString SMI
DLBCL_41874448 · CosMx SMI / NanoString SMI
DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion
GBM_40972572 · CosMx SMI Protein
HCC_39304772 · PCF / CODEX / PhenoCycler Fusion
HCC_39327501 · PCF / CODEX / PhenoCycler Fusion
HCC_39455893 · IMC / Imaging Mass Cytometry
HCC_39965889 · PCF / CODEX / PhenoCycler Fusion
LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI
HGSC_39179931 · CosMx SMI / NanoString SMI
HGSC_39179931 · MERFISH / MERSCOPE
HGSC_39179931 · Xenium
HGSOC_38570491 · CosMx SMI / NanoString SMI
HNSCC_41616773 · Other ST
HNSCC_41616773 PCF discovery cohort
HNSCC_41616773 PCF healthy lymph node cohort
HNSCC_41616773 PCF validation cohort
IBD_42049732 · CosMx SMI / NanoString SMI
LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI
IgAN_38898271 · Xenium
Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion
Intestine_39843748 · MERFISH / MERSCOPE
Intestine_39843748 · Xenium
Liver_41986723 · MERFISH / MERSCOPE
LUAD_36725934 · IMC / Imaging Mass Cytometry
Melanoma_35363543 · IMC / Imaging Mass Cytometry
Melanoma_40148341 · CosMx SMI / NanoString SMI
Melanoma_40457060 · CosMx SMI / NanoString SMI
Melanoma_41916292 · CyCIF / Cyclic IF
MERFISH 500-plex Vizgen showcase
MERFISH 815-plex Vizgen showcase
MERFISH 960-plex Vizgen showcase
MIBC_42126225 · Xenium
Neocortex_39779846 · MERFISH / MERSCOPE
Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion
NormalSkin_41872488 · MERFISH / MERSCOPE
NSCLC_38242124 · IMC / Imaging Mass Cytometry
NSCLC_40220761 · CosMx SMI / NanoString SMI
NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion
Oral_41663813 · Xenium
OSCC_41707652 · IMC / Imaging Mass Cytometry
PDAC_39227743 · CosMx SMI / NanoString SMI
PDAC_40269162 · CosMx SMI / NanoString SMI
PDAC_41916312 · Xenium
PulmonaryFibrosis_39901013 · Xenium
RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI
SCN_41720090 · MERFISH / MERSCOPE
SCN_41720090 · Visium HD
SPATCH_41107232 · CosMx SMI / NanoString SMI
SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion
SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics
SPATCH_41107232 · Xenium
SpinalCord_38513664 · ISS / In Situ Sequencing
SpinalCord_38513664 · Xenium
TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion
UlcerativeColitis_38374043 CosMx 960-plex Run 1
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
10x Genomics Visium HD showcase
10x Genomics Visium HD p2 TissueArray showcase
10x Genomics Visium HD p2 TMA showcase
10x Genomics Visium HD p2 WholeSlide showcase
10x Genomics Xenium Prime 5K showcase
Xenium Human Brain Gene Expression Panel showcase
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Xenium Human Immuno-Oncology Profiling Panel showcase
Xenium Human Lung Gene Expression Panel showcase
Xenium Human Multi-Tissue and Cancer Panel showcase
Organ
Brain (414)
Spinal cord (58)
Head and neck (292)
Lymphoid tissue (444)
Musculoskeletal (1)
Skin (222)
Breast (1,099)
Lung (2,803)
Liver (513)
Adrenal gland (24)
Kidney (69)
Bladder
Pancreas (115)
Small intestine (57)
Large intestine (837)
Ovary (222)
Prostate (4)
Uterus/Cervix (7)
Bone marrow (90)
Heart (2)
Disease state
Healthy/control (572)
Primary cancer (6,308)
Metastatic cancer (346)
Non-cancer disease (261)
Disease detail
Acute lymphoid leukemia (1)
Acute myeloid leukemia (5)
Adenosquamous lung carcinoma (60)
Alzheimer's disease (1)
Astrocytoma (Primary) (20)
Astrocytoma (Progression from grade II/III) (2)
Astrocytoma (Recurrent) (6)
Autism spectrum disorder cortical organoid model
B-cell non-Hodgkin lymphoma (35)
Brain metastasis
Brain metastasis from Bladder/urinary tract
Brain metastasis from Breast (29)
Brain metastasis from extremity (1)
Brain metastasis from Intestine
Brain metastasis from Lung (53)
Brain metastasis from Ovary/Fallopian tube
Brain metastasis from Skin (19)
Brain metastasis from Stomach/upper GI (3)
Brain metastasis from trunk (1)
Breast cancer (883)
Breast cancer (CCH/DCIS, ER+/PR+/HER2-1+) (1)
Breast cancer (DCIS, ER+/PR+/HER2-2+) (2)
Breast cancer (DCIS, ER-/PR-/HER2-2+) (1)
Breast cancer (DCIS, HER2-1+) (2)
Breast cancer (DCIS, HER2-2+) (1)
Breast cancer (DCIS, HER2-3+) (1)
Breast cancer (ductal carcinoma in situ) (59)
Breast cancer (ductal carcinoma in situ, HER2-1+) (1)
Breast cancer (IDC, ER+/PR+/HER2-1+) (1)
Breast cancer (IDC, ER+/PR+/HER2-2+) (1)
Breast cancer (IDC, HER2-) (1)
Breast cancer (invasive ductal carcinoma) (12)
Breast cancer (invasive ductal carcinoma, ductal carcinoma in situ) (2)
Breast cancer (invasive lobular carcinoma) (6)
Castleman disease (18)
Cervical Cancer (1)
Cervical cancer (2)
Cervical cancer (squamous cell carcinoma) (1)
Chronic myeloid leukemia bone marrow (55)
Classical Hodgkin lymphoma (79)
Colorectal cancer (668)
Colorectal cancer (adenocarcinoma) (13)
Cutaneous leishmaniasis (4)
Developing healthy lung
Diffuse large B-cell lymphoma (86)
Experimental autoimmune encephalomyelitis (multiple sclerosis model) (52)
Follicular lymphoid hyperplasia (1)
Glioblastoma (2)
Glioblastoma (Primary) (209)
Glioblastoma (Progression from grade II/III) (3)
Glioblastoma (Recurrent) (16)
Glioblastoma (Residual) (2)
Glioma, IDH status unknown (Primary) (12)
Head and neck squamous cell carcinoma (277)
Healthy/control kidney (15)
Healthy/control lung (10)
Healthy/normal skin (114)
Healthy adult human intestine (66)
Healthy colon control (31)
Healthy human (14)
Healthy intestine (18)
Hepatocellular carcinoma (500)
High-grade serous carcinoma (203)
IgA nephropathy
Inflammatory bowel disease (34)
Intrahepatic cholangiocarcinoma (6)
Kidney cancer (1)
Kidney cancer (papillary renal cell carcinoma) (1)
Kidney cancer (renal cell carcinoma) (1)
Kidney disease (AA amyloid) (2)
Kidney disease (C3GN) (1)
Kidney disease (CKD) (1)
Kidney disease (DKD) (29)
Kidney disease (DKD+FSGS) (1)
Kidney disease (DM) (6)
Kidney disease (DM/HTN) (4)
Kidney disease (FSGS) (1)
Kidney disease (HTN) (1)
Kidney disease (IgA) (1)
Kidney disease (MN) (1)
Kidney disease (TMA) (1)
Large-cell/other non-small cell lung cancer (15)
Lung adenocarcinoma (1,413)
Lung cancer (4)
Lung cancer (invasive acinar adenocarcinoma) (6)
Lung cancer (invasive adenocarcinoma) (1)
Lung squamous cell carcinoma (137)
Lymphoid tissue metastasis
Lymphoid tissue metastasis from acral (1)
Lymphoid tissue metastasis from extremity (3)
Lymphoid tissue metastasis from head/neck (1)
Lymphoid tissue metastasis from Oral cavity
Lymphoid tissue metastasis from trunk (2)
Melanocytic nevus / non-malignant skin control (12)
Melanoma (90)
Multiple sclerosis (4)
Muscle-invasive bladder cancer
Neuroblastoma (24)
Non-small cell lung cancer (1,108)
Normal/healthy bone marrow control (27)
Normal/healthy breast tissue control (97)
Normal/healthy heart control (1)
Normal/healthy hippocampus brain tissue (1)
Normal/healthy kidney control (1)
Normal/healthy liver control (6)
Normal/healthy pancreas control (3)
Normal/healthy suprachiasmatic nucleus brain tissue (2)
Normal/healthy tonsil control (1)
Normal brain cortex (1)
Normal developing human neocortex (6)
Oral health
Oral squamous cell carcinoma (92)
Organ-specific lymph-node control/no cancer (142)
Organ-specific spinal-cord control/no cancer (2)
Other non-small cell lung cancer (13)
Ovarian cancer (10)
Ovarian cancer (adenocarcinoma) (1)
Ovarian cancer (clear cell adenocarcinoma) (1)
Ovarian cancer (papillary serous carcinoma) (7)
Pancreatic cancer (1)
Pancreatic ductal adenocarcinoma (109)
Periodontitis
Prostate cancer (2)
Prostate cancer (adenocarcinoma) (2)
Pulmonary fibrosis / interstitial lung disease (cHP) (4)
Pulmonary fibrosis / interstitial lung disease (CPFE) (1)
Pulmonary fibrosis / interstitial lung disease (CTD-ILD) (2)
Pulmonary fibrosis / interstitial lung disease (ILD) (6)
Pulmonary fibrosis / interstitial lung disease (IPAF) (2)
Pulmonary fibrosis / interstitial lung disease (IPF) (16)
Pulmonary fibrosis / interstitial lung disease (NSIP) (2)
Pulmonary fibrosis / interstitial lung disease (Sarcoidosis) (2)
Reactive Follicular Hyperplasia (1)
Reactive follicular hyperplasia (1)
Reactive lymph node (1)
Rheumatoid arthritis (active)
Rheumatoid arthritis (remission)
Skin cancer (1)
Skin metastasis
Skin metastasis from extremity (1)
Skin metastasis from head/neck (2)
Skin metastasis from trunk (1)
Triple-negative breast cancer (27)
Ulcerative colitis (4)
Ulcerative colitis (post-vedolizumab, non-responder) (8)
Ulcerative colitis (post-vedolizumab, responder) (10)
Ulcerative colitis (pre-vedolizumab, non-responder) (7)
Ulcerative colitis (pre-vedolizumab, responder) (25)
Ulcerative colitis (vedolizumab-treated) (5)
Uterine cancer (3)
Technique
Atera (1)
CmTSA (1)
CosMx SMI / NanoString SMI (18)
CosMx SMI Protein (1)
CyCIF / Cyclic IF (1)
IMC / Imaging Mass Cytometry (9)
ISS / In Situ Sequencing (1)
MERFISH / MERSCOPE (8)
MIBI-TOF / Multiplexed Ion Beam Imaging (2)
Other ST (1)
PCF / CODEX / PhenoCycler Fusion (17)
Stereo-seq / Stereo-seq Spatial Transcriptomics (1)
Visium HD (5)
Xenium (14)
Modality
Spatial proteomics (31)
Spatial transcriptomics (49)
Sample
Atera_10xGenomics__Atera__WTA_Preview_FFPE_Breast_Cancer (1)
Atera_10xGenomics__Atera__WTA_Preview_FFPE_Cervical_Cancer (1)
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Breast_Cancer (1)
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Colon_Cancer (1)
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Lung_Cancer (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C06 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C01 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C02 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C03 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C04 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C05 (1)
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C06 (1)
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_11mm_Human_Colon_Cancer_Fresh_Frozen (1)
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Colon_Cancer (1)
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Heart (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF_Min_Depth (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Pancreatic_Cancer (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1 (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Pancreas (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE (1)
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Cervical_Cancer_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lymph_Node_Reactive_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_Cancer_FF (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_FF (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Prostate_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Skin_FFPE (1)
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Ovarian_Cancer_FFPE_XRrun (1)
B-NHL_38379051__PCF_CODEX__191_1reg001 (1)
B-NHL_38379051__PCF_CODEX__191_1reg002 (1)
B-NHL_38379051__PCF_CODEX__191_1reg003 (1)
B-NHL_38379051__PCF_CODEX__191_1reg004 (1)
B-NHL_38379051__PCF_CODEX__191_1reg005 (1)
B-NHL_38379051__PCF_CODEX__191_1reg006 (1)
B-NHL_38379051__PCF_CODEX__191_2reg001 (1)
B-NHL_38379051__PCF_CODEX__191_2reg002 (1)
B-NHL_38379051__PCF_CODEX__191_2reg003 (1)
B-NHL_38379051__PCF_CODEX__191_2reg004 (1)
B-NHL_38379051__PCF_CODEX__191_2reg005 (1)
B-NHL_38379051__PCF_CODEX__191_2reg006 (1)
B-NHL_38379051__PCF_CODEX__191_2reg007 (1)
B-NHL_38379051__PCF_CODEX__191_2reg008 (1)
B-NHL_38379051__PCF_CODEX__191_3reg001 (1)
B-NHL_38379051__PCF_CODEX__191_3reg002 (1)
B-NHL_38379051__PCF_CODEX__191_3reg003 (1)
B-NHL_38379051__PCF_CODEX__191_3reg004 (1)
B-NHL_38379051__PCF_CODEX__191_3reg005 (1)
B-NHL_38379051__PCF_CODEX__191_3reg006 (1)
B-NHL_38379051__PCF_CODEX__191_3reg007 (1)
B-NHL_38379051__PCF_CODEX__191_3reg008 (1)
B-NHL_38379051__PCF_CODEX__191_4reg001 (1)
B-NHL_38379051__PCF_CODEX__191_4reg002 (1)
B-NHL_38379051__PCF_CODEX__191_4reg003 (1)
B-NHL_38379051__PCF_CODEX__191_4reg004 (1)
B-NHL_38379051__PCF_CODEX__191_4reg005 (1)
B-NHL_38379051__PCF_CODEX__191_4reg006 (1)
B-NHL_38379051__PCF_CODEX__191_4reg007 (1)
B-NHL_38379051__PCF_CODEX__191_5reg001 (1)
B-NHL_38379051__PCF_CODEX__191_5reg002 (1)
B-NHL_38379051__PCF_CODEX__191_5reg003 (1)
B-NHL_38379051__PCF_CODEX__191_5reg004 (1)
B-NHL_38379051__PCF_CODEX__191_5reg005 (1)
B-NHL_38379051__PCF_CODEX__191_5reg006 (1)
BoneMarrow_38714197__PCF_CODEX__H10 (1)
BoneMarrow_38714197__PCF_CODEX__H14 (1)
BoneMarrow_38714197__PCF_CODEX__H26 (1)
BoneMarrow_38714197__PCF_CODEX__H27 (1)
BoneMarrow_38714197__PCF_CODEX__H32 (1)
BoneMarrow_38714197__PCF_CODEX__H33 (1)
BoneMarrow_38714197__PCF_CODEX__H35 (1)
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BRCA_31959985__IMC__BaselTMA_SP42_215_X3Y1__gate243 (1)
BRCA_31959985__IMC__BaselTMA_SP42_215_X4Y1__gate247 (1)
BRCA_31959985__IMC__BaselTMA_SP42_217_X1Y3__gate249 (1)
BRCA_31959985__IMC__BaselTMA_SP42_217_X2Y3__gate239 (1)
BRCA_31959985__IMC__BaselTMA_SP42_223_X9Y7__gate157 (1)
BRCA_31959985__IMC__BaselTMA_SP42_229_X1Y7__gate234 (1)
BRCA_31959985__IMC__BaselTMA_SP42_232_X7Y6__gate198 (1)
BRCA_31959985__IMC__BaselTMA_SP42_236_X11Y7__gate165 (1)
BRCA_31959985__IMC__BaselTMA_SP42_240_X10Y2__gate181 (1)
BRCA_31959985__IMC__BaselTMA_SP42_240_X9Y2__gate176 (1)
BRCA_31959985__IMC__BaselTMA_SP42_251_X15Y2__gate149 (1)
BRCA_31959985__IMC__BaselTMA_SP42_251_X16Y2__gate152 (1)
BRCA_31959985__IMC__BaselTMA_SP42_253_X13Y2__gate145 (1)
BRCA_31959985__IMC__BaselTMA_SP42_253_X14Y2__gate147 (1)
BRCA_31959985__IMC__BaselTMA_SP42_25_X3Y2__gate242 (1)
BRCA_31959985__IMC__BaselTMA_SP42_25_X4Y2__gate246 (1)
BRCA_31959985__IMC__BaselTMA_SP42_261_X11Y6__gate166 (1)
BRCA_31959985__IMC__BaselTMA_SP42_262_X10Y8__gate160 (1)
BRCA_31959985__IMC__BaselTMA_SP42_264_X14Y5__gate136 (1)
BRCA_31959985__IMC__BaselTMA_SP42_265_X14Y1__gate153 (1)
BRCA_31959985__IMC__BaselTMA_SP42_273_X4Y7__gate231 (1)
BRCA_31959985__IMC__BaselTMA_SP42_273_X6Y7__gate193 (1)
BRCA_31959985__IMC__BaselTMA_SP42_275_X5Y4__gate204 (1)
BRCA_31959985__IMC__BaselTMA_SP42_275_X6Y4__gate208 (1)
BRCA_31959985__IMC__BaselTMA_SP42_279_X14Y6__gate135 (1)
BRCA_31959985__IMC__BaselTMA_SP42_27_X6Y6__gate194 (1)
BRCA_31959985__IMC__BaselTMA_SP42_285_X7Y7__gate197 (1)
BRCA_31959985__IMC__BaselTMA_SP42_28_X11Y2__gate185 (1)
BRCA_31959985__IMC__BaselTMA_SP42_28_X12Y2__gate173 (1)
BRCA_31959985__IMC__BaselTMA_SP42_29_X7Y2__gate213 (1)
BRCA_31959985__IMC__BaselTMA_SP42_30_X8Y3__gate216 (1)
BRCA_31959985__IMC__BaselTMA_SP42_30_X9Y3__gate175 (1)
BRCA_31959985__IMC__BaselTMA_SP42_35_X16Y4__gate150 (1)
BRCA_31959985__IMC__BaselTMA_SP42_36_X5Y1__gate207 (1)
BRCA_31959985__IMC__BaselTMA_SP42_36_X6Y1__gate211 (1)
BRCA_31959985__IMC__BaselTMA_SP42_46_X10Y7__gate161 (1)
BRCA_31959985__IMC__BaselTMA_SP42_51_X1Y2__gate250 (1)
BRCA_31959985__IMC__BaselTMA_SP42_56_X2Y6__gate221 (1)
BRCA_31959985__IMC__BaselTMA_SP42_59_X3Y9__gate223 (1)
BRCA_31959985__IMC__BaselTMA_SP42_5_X8Y7__gate201 (1)
BRCA_31959985__IMC__BaselTMA_SP42_64_X13Y4__gate143 (1)
BRCA_31959985__IMC__BaselTMA_SP42_64_X14Y4__gate146 (1)
BRCA_31959985__IMC__BaselTMA_SP42_6_X11Y1__gate186 (1)
BRCA_31959985__IMC__BaselTMA_SP42_6_X12Y1__gate174 (1)
BRCA_31959985__IMC__BaselTMA_SP42_70_X5Y3__gate205 (1)
BRCA_31959985__IMC__BaselTMA_SP42_70_X6Y3__gate209 (1)
BRCA_31959985__IMC__BaselTMA_SP42_71_X8Y8__gate200 (1)
BRCA_31959985__IMC__BaselTMA_SP42_73_X12Y7__gate169 (1)
BRCA_31959985__IMC__BaselTMA_SP42_74_X15Y3__gate148 (1)
BRCA_31959985__IMC__BaselTMA_SP42_74_X16Y3__gate151 (1)
BRCA_31959985__IMC__BaselTMA_SP42_76_X13Y6__gate131 (1)
BRCA_31959985__IMC__BaselTMA_SP42_80_X3Y3__gate241 (1)
BRCA_31959985__IMC__BaselTMA_SP42_80_X4Y3__gate245 (1)
BRCA_31959985__IMC__BaselTMA_SP42_81_X11Y4__gate183 (1)
BRCA_31959985__IMC__BaselTMA_SP42_81_X12Y4__gate187 (1)
BRCA_31959985__IMC__BaselTMA_SP42_82_X2Y9__gate218 (1)
BRCA_31959985__IMC__BaselTMA_SP42_84_X7Y1__gate214 (1)
BRCA_31959985__IMC__BaselTMA_SP42_84_X8Y1__gate217 (1)
BRCA_31959985__IMC__BaselTMA_SP42_87_X12Y5__gate171 (1)
BRCA_31959985__IMC__BaselTMA_SP42_89_X4Y6__gate232 (1)
BRCA_31959985__IMC__BaselTMA_SP42_91_X11Y3__gate184 (1)
BRCA_31959985__IMC__BaselTMA_SP42_91_X12Y3__gate172 (1)
BRCA_31959985__IMC__BaselTMA_SP42_96_X10Y3__gate180 (1)
BRCA_31959985__IMC__BaselTMA_SP42_98_X11Y5__gate167 (1)
BRCA_31959985__IMC__BaselTMA_SP42_99_X5Y7__gate189 (1)
BRCA_31959985__IMC__BaselTMA_SP43_0_X10Y7__gate275 (1)
BRCA_31959985__IMC__BaselTMA_SP43_0_X1Y1__gate370 (1)
BRCA_31959985__IMC__BaselTMA_SP43_0_X2Y1__gate371 (1)
BRCA_31959985__IMC__BaselTMA_SP43_102_X1Y4__gate362 (1)
BRCA_31959985__IMC__BaselTMA_SP43_102_X2Y4__gate363 (1)
BRCA_31959985__IMC__BaselTMA_SP43_103_X5Y4__gate321 (1)
BRCA_31959985__IMC__BaselTMA_SP43_103_X6Y4__gate322 (1)
BRCA_31959985__IMC__BaselTMA_SP43_107_X4Y7__gate350 (1)
BRCA_31959985__IMC__BaselTMA_SP43_108_X13Y8__gate376 (1)
BRCA_31959985__IMC__BaselTMA_SP43_110_X14Y8__gate377 (1)
BRCA_31959985__IMC__BaselTMA_SP43_111_X8Y6__gate285 (1)
BRCA_31959985__IMC__BaselTMA_SP43_115_X4Y8__gate334 (1)
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7,487 matches
7,487 curated
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Sample
Organ
Disease state
Technique
Cells
Spatial module
Curation
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV62
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
2,706
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV63
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
2,183
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV64
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
2,310
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV65
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
1,668
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV66
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Healthy/control
CosMx
1,305
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV67
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
2,462
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV7
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Healthy/control
CosMx
963
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV70
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Healthy/control
CosMx
1,075
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV71
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
1,515
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV72
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
1,829
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV73
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
2,486
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV74
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
1,829
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV75
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
1,573
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV76
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Healthy/control
CosMx
854
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV77
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Healthy/control
CosMx
631
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV78
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
1,312
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV79
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
2,223
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV8
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
2,527
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV80
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Non-cancer disease
CosMx
3,145
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV81
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Healthy/control
CosMx
1,834
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV9
UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal
Large intestine
Healthy/control
CosMx
870
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV1
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Non-cancer disease
CosMx
4,964
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV11
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Non-cancer disease
CosMx
4,257
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV13
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Non-cancer disease
CosMx
3,170
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV14
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Healthy/control
CosMx
3,475
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV15
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Healthy/control
CosMx
2,946
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV16
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Healthy/control
CosMx
2,666
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV17
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Healthy/control
CosMx
2,829
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV18
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Healthy/control
CosMx
2,527
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV19
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Healthy/control
CosMx
2,355
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV2
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Non-cancer disease
CosMx
4,864
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV20
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Healthy/control
CosMx
3,271
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV21
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Healthy/control
CosMx
5,165
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV3
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Non-cancer disease
CosMx
3,697
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV4
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Non-cancer disease
CosMx
5,284
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV5
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Non-cancer disease
CosMx
4,446
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV6
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Non-cancer disease
CosMx
6,271
D
I
T
Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV9
UlcerativeColitis_38374043 CosMx 960-plex Run 1
Large intestine
Non-cancer disease
CosMx
4,192
D
T1
T2
T3
I
T1
T2
T3
T
T1
T2
T3
Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Alzheimers_With_Addon
Xenium Human Brain Gene Expression Panel showcase
Brain
Healthy/control
Xenium
44,955
D
I
T
Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Glioblastoma_With_Addon
Xenium Human Brain Gene Expression Panel showcase
Brain
Primary cancer
Xenium
40,887
D
I
T
Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Healthy_With_Addon
Xenium Human Brain Gene Expression Panel showcase
Brain
Non-cancer disease
Xenium
24,406
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
574,852
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_1
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
892,966
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_2
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
885,523
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_With_Addon
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
576,963
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
356,746
D
I
T
Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC_With_Addon
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
Breast
Primary cancer
Xenium
365,604
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
254,480
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
Breast
Primary cancer
Xenium
375,529
D
I
T
Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
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