scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
HNSCCValidation_41616773__PCF_CODEX__F10 HNSCC_41616773 PCF validation cohort Lymph node metastasis Metastatic cancer CODEX 38,658 T1T2T3T1T2T3T1T2T3
HNSCCValidation_41616773__PCF_CODEX__E2 HNSCC_41616773 PCF validation cohort Lymph node metastasis Metastatic cancer CODEX 26,185 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_E5 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 25,883 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_D1 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 24,497 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_D5 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 23,893 T1T2T3T1T2T3T1T2T3
HNSCCValidation_41616773__PCF_CODEX__F9 HNSCC_41616773 PCF validation cohort Lymph node metastasis Metastatic cancer CODEX 23,608 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_I1 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 23,472 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg027 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 22,700 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg026 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 22,598 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_C4 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 22,249 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg075 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 21,860 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg040 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 21,723 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg070 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 21,295 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_F2 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 21,101 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg093 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 20,832 T1T2T3T1T2T3T1T2T3
HNSCCValidation_41616773__PCF_CODEX__B2 HNSCC_41616773 PCF validation cohort Lymph node metastasis Metastatic cancer CODEX 19,794 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_G3 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 19,065 T1T2T3T1T2T3T1T2T3
HNSCCValidation_41616773__PCF_CODEX__G10 HNSCC_41616773 PCF validation cohort Lymph node metastasis Metastatic cancer CODEX 19,042 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg056 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 18,427 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg115 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 18,277 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_I2 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 18,004 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg133 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 16,543 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_B4 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 16,515 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg095 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 16,244 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg084 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 15,823 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg105 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 15,229 T1T2T3T1T2T3T1T2T3
HNSCCValidation_41616773__PCF_CODEX__B9 HNSCC_41616773 PCF validation cohort Lymph node metastasis Metastatic cancer CODEX 13,775 T1T2T3T1T2T3T1T2T3
HNSCCValidation_41616773__PCF_CODEX__A2 HNSCC_41616773 PCF validation cohort Lymph node metastasis Metastatic cancer CODEX 13,294 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg004 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 13,134 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg112 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 12,468 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg055 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 12,170 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg117 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 11,953 T1T2T3T1T2T3T1T2T3
HNSCCValidation_41616773__PCF_CODEX__C9 HNSCC_41616773 PCF validation cohort Lymph node metastasis Metastatic cancer CODEX 10,903 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__523_S2reg030 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 10,831 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg121 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 10,480 T1T2T3T1T2T3T1T2T3
HGSC_39179931__CosMx_SMI__SMI_T10_F019 HGSC_39179931 · CosMx SMI / NanoString SMI Peritoneum Metastatic cancer CosMx 10,474 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg068 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 10,456 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_F4 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 10,193 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg058 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 10,008 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__522_S1reg051 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 9,701 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg046 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 9,675 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg031 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 9,605 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg082 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 9,583 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_G4 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 9,451 T1T2T3T1T2T3T1T2T3
HGSC_39179931__CosMx_SMI__SMI_T13_F015 HGSC_39179931 · CosMx SMI / NanoString SMI Peritoneum Metastatic cancer CosMx 9,348 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg075 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 9,261 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__522_S1reg079 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 9,205 T1T2T3T1T2T3T1T2T3
HNSCC_41616773__Other_ST__TMA1_reg044 HNSCC_41616773 · Other ST Lymph node metastasis Metastatic cancer Other ST 9,079 T1T2T3T1T2T3T1T2T3
HNSCCDiscovery_41616773__PCF_CODEX__523_S1reg039 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 9,067 T1T2T3T1T2T3T1T2T3
HGSC_39179931__Xenium__XEN_T10_H4 HGSC_39179931 · Xenium Peritoneum Metastatic cancer Xenium 9,052 T1T2T3T1T2T3T1T2T3