scAtria single-cell spatial atlas resource

Browse

? Browse is the search page: type a query, then refine by organ, technique, modality, curation, and dataset/sample view.
Dataset Sample
Card Table
67 Datasets
Search
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 67 matches · dataset view
Reset
Columns 8
Dataset table columns Selections persist in the URL and manifest download.
Reset columns
Disease state: Primary cancer × 67 matches 59 curated
Dataset Organs ?For mixed datasets, fractions show sample counts per organ. Disease state Technique Samples Cells Spatial module Curation
Xenium Human Brain Gene Expression Panel showcase
XeniumBrain_10xGenomics__Xenium
Brain 3
Healthy/control 1/3 Non-cancer disease 1/3 Primary cancer 1/3
Xenium 3 110,248
0/3
 Curated
Xenium Human Breast Gene Expression Panel 10x Genomics showcase
XeniumBreast_10xGenomics__Xenium
Breast 6
Primary cancer 6
Xenium 6 3,652,654
0/6
 Curated
Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase
XeniumBreastJanesick_10xGenomics__Xenium
Breast 12
Primary cancer 11/12 Healthy/control 1/12
Xenium 12 3,442,976
0/12
 Curated
Xenium Human Immuno-Oncology Profiling Panel showcase
XeniumImmune_10xGenomics__Xenium
Brain 1/5 Large intestine 1/5 Lung 1/5 Ovary 1/5 Pancreas 1/5
Primary cancer 5
Xenium 5 1,848,679
0/5
 Curated
Xenium Human Lung Gene Expression Panel showcase
XeniumLung_10xGenomics__Xenium
Lung 3
Primary cancer 2/3 Healthy/control 1/3
Xenium 3 1,105,707
0/3
 Curated
Xenium Human Multi-Tissue and Cancer Panel showcase
XeniumMulti_10xGenomics__Xenium
Bone marrow 2/20 Heart 1/20 Kidney 3/20 Liver 2/20 Lung 2/20 Lymphoid tissue 3/20 Musculoskeletal 1/20 Ovary 1/20 Pancreas 3/20 Skin 2/20
Healthy/control 9/20 Primary cancer 9/20 Non-cancer disease 2/20
Xenium 20 5,095,938
0/20
 Curated
cHL_41923627 · CosMx SMI / NanoString SMI
cHL_41923627__CosMx_SMI
Lymphoid tissue 43
Primary cancer 43
CosMx 43 266,199
43/43
 Curated
cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging
cHL_41923627__MIBI_TOF
Lymphoid tissue 9
Primary cancer 9
MIBI 9 1,409,210
0/9
 Curated
cHL_41923627 · PCF / CODEX / PhenoCycler Fusion
cHL_41923627__PCF_CODEX
Lymphoid tissue 27
Primary cancer 27
CODEX 27 934,478
3/27
 Curated
CRC_42167227 · CosMx SMI / NanoString SMI
CRC_42167227__CosMx_SMI
Large intestine 14
Primary cancer 14
CosMx 14 1,901,559
0/14
 Source
DLBCL_41120574 · CosMx SMI / NanoString SMI
DLBCL_41120574__CosMx_SMI
Lymphoid tissue 6
Primary cancer 6
CosMx 6 3,512,019
0/6
 Source
GBM_40972572 · CosMx SMI Protein
GBM_40972572__CosMx_SMI_protein
Brain 4
Primary cancer 4
CosMx-P 4 239,436
0/4
 Source
HGSOC_38570491 · CosMx SMI / NanoString SMI
HGSOC_38570491__CosMx_SMI
Ovary 1
Primary cancer 1
CosMx 1 39,959
0/1
 Source
MIBC_42126225 · Xenium
MIBC_42126225__Xenium
Bladder 5
Primary cancer 5
Xenium 5 131,875
0/5
 Source
Melanoma_40457060 · CosMx SMI / NanoString SMI
Melanoma_40457060__CosMx_SMI
Skin 2
Primary cancer 2
CosMx 2 18,462
0/2
 Source
NSCLC_40220761 · CosMx SMI / NanoString SMI
NSCLC_40220761__CosMx_SMI
Lung 6
Primary cancer 6
CosMx 6 350,199
0/6
 Source
PDAC_41916312 · Xenium
PDAC_41916312__Xenium
Pancreas 1
Primary cancer 1
Xenium 1 77,695
0/1
 Source