scAtria single-cell spatial atlas resource

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7,730 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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All records 7,730 matches 7,508 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
PulmonaryFibrosis_39901013__Xenium__VUILD110 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 97,221 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD115 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 58,850 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD141 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 13,526 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD142 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 1,114 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD48LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 9,498 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD48MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 3,558 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD49 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 8,918 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD58 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 3,711 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD78LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 13,125 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD78MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 29,202 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD91LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 13,463 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD91MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 9,980 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD96LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 31,727 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD96MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 36,615 Curated
SCN_41720090__MERFISH__202408121157_humanbrainAP1615_VMSC03601_region_0 SCN_41720090 · MERFISH / MERSCOPE Brain Healthy/control MERFISH 6,953 T1T2T3T1T2T3T1T2T3 Curated
SCN_41720090__Visium_HD__slice46_HD_expand_cell_4_10genes SCN_41720090 · Visium HD Brain Healthy/control Visium HD 16,123 T1T2T3T1T2T3T1T2T3 Curated
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_COAD SPATCH_41107232 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 292,371 Curated
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_HCC SPATCH_41107232 · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 237,030 Curated
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_OV SPATCH_41107232 · CosMx SMI / NanoString SMI Ovary Primary cancer CosMx 289,272 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 251,078 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 160,879 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 264,005 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 165,142 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 141,376 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 325,192 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 266,625 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 132,648 Curated
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 263,757 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_COAD SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Large intestine Primary cancer Stereo 361,260 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_HCC SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Liver Primary cancer Stereo 390,774 Curated
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_OV SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Ovary Primary cancer Stereo 319,366 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_COAD SPATCH_41107232 · Xenium Large intestine Primary cancer Xenium 405,927 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_HCC SPATCH_41107232 · Xenium Liver Primary cancer Xenium 271,687 Curated
SPATCH_41107232__Xenium__SPATCH_Xenium_OV SPATCH_41107232 · Xenium Ovary Primary cancer Xenium 410,193 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_C_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,120 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_C_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 6,800 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_C_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,851 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_L_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,584 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,782 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_LATE_L_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,509 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_B_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 29,500 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_B_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 36,918 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_B_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 33,728 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_B_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 52,884 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_C_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,586 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_C_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,562 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_C_R3 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,865 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_C_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,669 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_L_R1 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 5,499 T1T2T3T1T2T3T1T2T3 Curated
SpinalCord_38513664__ISS__CNTRL_PEAK_L_R2 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 4,701 T1T2T3T1T2T3T1T2T3 Curated