scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
DKD_42056516__Xenium__HK2753 DKD_42056516 · Xenium Kidney Healthy/control Xenium 161,350
Melanoma_41916292__CyCIF__PT42_5_Post-Pembro-1 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 161,234
B-NHL_38379051__PCF_CODEX__191_4reg006 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 161,017
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Lung Primary cancer Xenium 161,000
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 160,879
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 159,463
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen 10x Genomics Visium HD showcase Breast Primary cancer Visium HD 159,301
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Breast_Cancer 10x Genomics Visium HD p2 TissueArray showcase Breast Primary cancer Visium HD 158,058
Intestine_39843748__Xenium__GSE280895_perturb__SI_3 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 157,481
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 156,001
DLBCL_41120574__CosMx_SMI__F1_6 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 155,694
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 155,513
CosMx64_Bruker__CosMx_SMI_protein__CosMxBreast64_Bruker Bruker CosMx 64-protein FFPE showcase Breast Healthy/control CosMx-P 153,839
B-NHL_38379051__PCF_CODEX__191_1reg003 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 152,635
SpinalCord_38513664__Xenium__MSi1 SpinalCord_38513664 · Xenium Spinal cord Non-cancer disease Xenium 152,508
CosMxWTx_Bruker__CosMx_SMI__CosMxBreastCancerMultiWTx_Bruker Bruker CosMx WTx FFPE showcase Breast Primary cancer CosMx 152,451
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 151,153
DKD_42056516__Xenium__HK2695 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 151,101
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLung_cancer_section Xenium Human Multi-Tissue and Cancer Panel showcase Lung Primary cancer Xenium 150,365
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 150,145
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 149,347
B-NHL_38379051__PCF_CODEX__191_1reg001 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 148,293
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE 10x Genomics Visium HD showcase Kidney Healthy/control Visium HD 148,056
B-NHL_38379051__PCF_CODEX__191_4reg003 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 146,907
Melanoma_41916292__CyCIF__PT35_5_On-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 145,180
CastlemanDisease_40593805__Xenium__xenium_dat__Core8 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 144,662
HGSC_39179931__MERFISH__MER_TB21361 HGSC_39179931 · MERFISH / MERSCOPE Ovary Primary cancer MERFISH 142,788
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 141,376
TNBC_38194915__PCF_CODEX__210115_Breast_Cassette15_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 141,044
XeniumMulti_10xGenomics__Xenium__Xenium_V1_human_Pancreas_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Primary cancer Xenium 140,702
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 138,127
MERFISH_960_Vizgen__MERFISH__MERFISH960HuBrainSF_R0 MERFISH 960-plex Vizgen showcase Brain Non-cancer disease MERFISH 137,627
CastlemanDisease_40593805__Xenium__xenium_dat__Core7 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 136,328
DLBCL_41120574__CosMx_SMI__F5_5 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 135,185
SpinalCord_38513664__Xenium__MSa1 SpinalCord_38513664 · Xenium Spinal cord Non-cancer disease Xenium 133,864
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 132,648
B-NHL_38379051__PCF_CODEX__191_3reg008 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 132,526
CosMxWTx_Bruker__CosMx_SMI__CosMxHippocampusWTx_Bruker Bruker CosMx WTx FFPE showcase Brain Healthy/control CosMx 131,568
Melanoma_41916292__CyCIF__PT35_6_Post-Pembro Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 130,933
B-NHL_38379051__PCF_CODEX__191_3reg007 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 129,092
B-NHL_38379051__PCF_CODEX__191_3reg002 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 128,605
B-NHL_38379051__PCF_CODEX__191_1reg006 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 127,265
DKD_42056516__CosMx_SMI__HK2990 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Healthy/control CosMx 123,214
CastlemanDisease_40593805__Xenium__xenium_dat__Core16 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 119,079
cHL_41923627__MIBI_TOF__R3 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 116,449
B-NHL_38379051__PCF_CODEX__191_4reg005 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 115,324
TNBC_38194915__PCF_CODEX__210118_Breast_Cassette14_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 113,909
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 113,756
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Lung_Cancer 10x Genomics Visium HD p2 TissueArray showcase Lung Primary cancer Visium HD 113,248
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Skin_FFPE 10x Genomics Xenium Prime 5K showcase Skin Primary cancer Xenium 112,551