scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
NSCLC_40220761__CosMx_SMI__Section_04 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 58,805 Source
NSCLC_40220761__CosMx_SMI__Section_10 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 58,228 Source
NSCLC_40220761__CosMx_SMI__Section_16 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 57,435 Source
NSCLC_40220761__CosMx_SMI__Section_22 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 59,208 Source
NSCLC_40220761__CosMx_SMI__Section_28 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 59,564 Source
NSCLC_40220761__CosMx_SMI__Section_34 NSCLC_40220761 · CosMx SMI / NanoString SMI Lung Primary cancer CosMx 56,959 Source
Oral_41663813__Xenium__Oral_41663813_H1 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 16,985 Source
Oral_41663813__Xenium__Oral_41663813_H2a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 14,819 Source
Oral_41663813__Xenium__Oral_41663813_H2b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 5,593 Source
Oral_41663813__Xenium__Oral_41663813_H3a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,247 Source
Oral_41663813__Xenium__Oral_41663813_H3b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,601 Source
Oral_41663813__Xenium__Oral_41663813_H4 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,658 Source
Oral_41663813__Xenium__Oral_41663813_H4a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 13,955 Source
Oral_41663813__Xenium__Oral_41663813_H4b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 18,033 Source
Oral_41663813__Xenium__Oral_41663813_H5 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 23,249 Source
Oral_41663813__Xenium__Oral_41663813_H6 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 18,428 Source
Oral_41663813__Xenium__Oral_41663813_H7a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,191 Source
Oral_41663813__Xenium__Oral_41663813_H7b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 9,998 Source
Oral_41663813__Xenium__Oral_41663813_H8 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 27,704 Source
Oral_41663813__Xenium__Oral_41663813_H9a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 17,161 Source
Oral_41663813__Xenium__Oral_41663813_H9b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 20,980 Source
Oral_41663813__Xenium__Oral_41663813_P1 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 28,555 Source
Oral_41663813__Xenium__Oral_41663813_P10 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 15,455 Source
Oral_41663813__Xenium__Oral_41663813_P12a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 12,788 Source
Oral_41663813__Xenium__Oral_41663813_P12b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 3,793 Source
Oral_41663813__Xenium__Oral_41663813_P13a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 4,674 Source
Oral_41663813__Xenium__Oral_41663813_P13b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 7,208 Source
Oral_41663813__Xenium__Oral_41663813_P13c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 9,146 Source
Oral_41663813__Xenium__Oral_41663813_P14a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 45,548 Source
Oral_41663813__Xenium__Oral_41663813_P14b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 40,763 Source
Oral_41663813__Xenium__Oral_41663813_P15 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 15,682 Source
Oral_41663813__Xenium__Oral_41663813_P2a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 22,328 Source
Oral_41663813__Xenium__Oral_41663813_P2b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 24,866 Source
Oral_41663813__Xenium__Oral_41663813_P2c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 4,112 Source
Oral_41663813__Xenium__Oral_41663813_P2d Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 1,787 Source
Oral_41663813__Xenium__Oral_41663813_P3 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 17,771 Source
Oral_41663813__Xenium__Oral_41663813_P4a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 7,668 Source
Oral_41663813__Xenium__Oral_41663813_P4b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 23,554 Source
Oral_41663813__Xenium__Oral_41663813_P5a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 6,610 Source
Oral_41663813__Xenium__Oral_41663813_P5b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 10,503 Source
Oral_41663813__Xenium__Oral_41663813_P5c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 20,385 Source
Oral_41663813__Xenium__Oral_41663813_P6 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 54,771 Source
Oral_41663813__Xenium__Oral_41663813_P7a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 9,388 Source
Oral_41663813__Xenium__Oral_41663813_P7b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 12,222 Source
Oral_41663813__Xenium__Oral_41663813_P8 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 35,013 Source
Oral_41663813__Xenium__Oral_41663813_P9a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 5,014 Source
Oral_41663813__Xenium__Oral_41663813_P9b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 19,836 Source
Oral_41663813__Xenium__Oral_41663813_P9c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 16,249 Source
Oral_41663813__Xenium__Oral_41663813_P9d Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 1,954 Source
Oral_41663813__Xenium__Oral_41663813_P9e Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 24,232 Source