scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BrainTumor_36725935__IMC__Glioma_043C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,330 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_043C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,044 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_044C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,574 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_044C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,848 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_045C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,840 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_045C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,537 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_046C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,073 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_046C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,425 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_047C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,296 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_047C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,806 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_048C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,387 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_048C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,435 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_049C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,663 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_049C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,407 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_050C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,047 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_051C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,464 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_051C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,762 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_052C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,627 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_053C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,142 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_053C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,051 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_054C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,661 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_054C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,841 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_055C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,685 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_055C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,449 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_056C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,761 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_056C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,497 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_057C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,717 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_057C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,447 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_058C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,521 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_059C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,375 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_060C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,139 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_060C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,533 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_061C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,979 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_061C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,188 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_062C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,872 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_063C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,131 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_063C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,129 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_064C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,585 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_064C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,673 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_065C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,609 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_065C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,673 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_066C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,593 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_067C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,829 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_068C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,564 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_069C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 6,094 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_069C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,644 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_070C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,570 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_071C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,862 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_072C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,727 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_072C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,282 T1T2T3T1T2T3T1T2T3 Curated