scAtria single-cell spatial atlas resource

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Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
MERFISH_960_Vizgen__MERFISH__MERFISH960HuBrainS3_R1 MERFISH 960-plex Vizgen showcase Brain Healthy/control MERFISH 69,931 T1T2T3T1T2T3T1T2T3
NIH-5900-BA17 Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__NIH-5900-BA17 Brain Healthy/control MERFISH 56,343 T1T2T3T1T2T3T1T2T3
NIH-4365-BA10 Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__NIH-4365-BA10 Brain Healthy/control MERFISH 52,483 T1T2T3T1T2T3T1T2T3
ARKFrozen-62-PFC Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__ARKFrozen-62-PFC Brain Healthy/control MERFISH 51,074 T1T2T3T1T2T3T1T2T3
UCSF2018-003-MFG Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__UCSF2018-003-MFG Brain Healthy/control MERFISH 47,632 T1T2T3T1T2T3T1T2T3
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Alzheimers_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Healthy/control Xenium 44,955 T1T2T3T1T2T3T1T2T3
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Glioblastoma_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Primary cancer Xenium 40,887 T1T2T3T1T2T3T1T2T3
NIH-4392-BA17 Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__NIH-4392-BA17 Brain Healthy/control MERFISH 26,593 T1T2T3T1T2T3T1T2T3
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Healthy_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Non-cancer disease Xenium 24,406 T1T2T3T1T2T3T1T2T3
SCN_41720090__Visium_HD__slice46_HD_expand_cell_4_10genes SCN_41720090 · Visium HD Brain Healthy/control Visium HD 16,123 T1T2T3T1T2T3T1T2T3
SCN_41720090__MERFISH__202408121157_humanbrainAP1615_VMSC03601_region_0 SCN_41720090 · MERFISH / MERSCOPE Brain Healthy/control MERFISH 6,953 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_007C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 6,656 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_094C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 6,176 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_069C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 6,094 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_015C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,853 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_097C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,816 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_056C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,761 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_015C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,752 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_102C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,688 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_001C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,655 T1T2T3T1T2T3T1T2T3
Melanoma_35363543__IMC__09RD Melanoma_35363543 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 5,605 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_083C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,580 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__BrM_038C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 5,518 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_056C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,497 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__BrM_041C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 5,489 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_057C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,447 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_082C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,446 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_087C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,427 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_102C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,325 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_077C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,240 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_080C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,201 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_002C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,195 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_087C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,184 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_112C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,177 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_087C3 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,141 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_039C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,134 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__BrM_008M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 5,042 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_088C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,037 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_093C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,998 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__BrM_045C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 4,945 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_018C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,914 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__BrM_009M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 4,890 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_030C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,879 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__BrM_046C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,869 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_133C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,827 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_094C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,814 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_026C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,794 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_097C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,759 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__Glioma_072C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,727 T1T2T3T1T2T3T1T2T3
BrainTumor_36725935__IMC__BrM_042M BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 4,717 T1T2T3T1T2T3T1T2T3