scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP2 MERFISH 500-plex Vizgen showcase Liver Primary cancer MERFISH 598,141 T1T2T3T1T2T3T1T2T3
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP1 MERFISH 500-plex Vizgen showcase Liver Primary cancer MERFISH 568,355 T1T2T3T1T2T3T1T2T3
CosMx1k_Bruker__CosMx_SMI__CosMxLiver1k_Bruker__CancerousLiver Bruker CosMx 1k FFPE showcase Liver Primary cancer CosMx 460,441 T1T2T3T1T2T3T1T2T3
SPATCH_41107232__Stereo_seq__SPATCH_Stereo-seq_HCC SPATCH_41107232 · Stereo-seq / Stereo-seq Spatial Transcriptomics Liver Primary cancer Stereo 390,774 T1T2T3T1T2T3T1T2T3
CosMx1k_Bruker__CosMx_SMI__CosMxLiver1k_Bruker__NormalLiver Bruker CosMx 1k FFPE showcase Liver Healthy/control CosMx 332,877 T1T2T3T1T2T3T1T2T3
HCC_41723121__CosMx_SMI__Liver_3HT LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 330,655 T1T2T3T1T2T3T1T2T3
ICC_41723121__CosMx_SMI__Liver_1CB LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 327,199 T1T2T3T1T2T3T1T2T3
HCC_41723121__CosMx_SMI__Liver_3HB LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 320,670 T1T2T3T1T2T3T1T2T3
SPATCH_41107232__Xenium__SPATCH_Xenium_HCC SPATCH_41107232 · Xenium Liver Primary cancer Xenium 271,687 T1T2T3T1T2T3T1T2T3
HCC_41723121__CosMx_SMI__Liver_1HT LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 251,694 T1T2T3T1T2T3T1T2T3
HCC_41723121__CosMx_SMI__Liver_2HT LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 240,021 T1T2T3T1T2T3T1T2T3
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_nondiseased_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Healthy/control Xenium 239,271 T1T2T3T1T2T3T1T2T3
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_HCC SPATCH_41107232 · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 237,030 T1T2T3T1T2T3T1T2T3
ICC_41723121__CosMx_SMI__Liver_1CT LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 235,181 T1T2T3T1T2T3T1T2T3
ICC_41723121__CosMx_SMI__Liver_3CB LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 174,833 T1T2T3T1T2T3T1T2T3
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_cancer_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Primary cancer Xenium 162,628 T1T2T3T1T2T3T1T2T3
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 160,879 T1T2T3T1T2T3T1T2T3
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 141,376 T1T2T3T1T2T3T1T2T3
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_HCC SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 132,648 T1T2T3T1T2T3T1T2T3
HCC_41723121__CosMx_SMI__Liver_4HN LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 97,949 T1T2T3T1T2T3T1T2T3