scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
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Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
PulmonaryFibrosis_39901013__Xenium__VUILD110 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 97,221 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD106 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 91,778 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD115 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 58,850 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__THD0008 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 36,781 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD96MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 36,615 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD96LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 31,727 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD107MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 30,615 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD102MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 30,425 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD78MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 29,202 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD102LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 24,925 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD104MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 23,998 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__THD0011 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 23,676 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD104LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 20,781 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUHD069 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 16,343 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__TILD175 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 15,866 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD141 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 13,526 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_154 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 13,476 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD91LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 13,463 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD78LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 13,125 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_23 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 12,807 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_86 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 12,470 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_210 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 12,273 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_72 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 12,109 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD105LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 11,892 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_247 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,552 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_198 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,526 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_31 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,448 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__TILD111LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 11,379 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_182 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,267 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_161 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,196 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_54 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,149 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_127 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,092 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__TILD299LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 11,055 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_26 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,843 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_156 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,764 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_226 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,727 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_30 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,719 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_243 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,587 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_213 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,512 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_123 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,326 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_103 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,303 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__TILD117LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 10,288 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_160 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,201 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__TILD028MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 10,153 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_89 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,102 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD91MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 9,980 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_13 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,795 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_190 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,747 T1T2T3T1T2T3T1T2T3
NSCLC_40408481__PCF_CODEX__C_14 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,604 T1T2T3T1T2T3T1T2T3
PulmonaryFibrosis_39901013__Xenium__VUILD48LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 9,498 T1T2T3T1T2T3T1T2T3