scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
GSM5910322_Panel4_CW60219E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910322_Panel4_CW60219E-4_i Brain Non-cancer disease MERFISH 33,625 Source
GSM5910323_Panel4_CW60220F-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910323_Panel4_CW60220F-4_i Brain Non-cancer disease MERFISH 14,373 Source
GSM5910324_Panel4_CW60219E-4_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910324_Panel4_CW60219E-4_ii Brain Non-cancer disease MERFISH 33,531 Source
GSM5910325_Panel4_CW20047D-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910325_Panel4_CW20047D-3_i Brain Non-cancer disease MERFISH 4,905 Source
GSM5910326_Panel4_CW60040F-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910326_Panel4_CW60040F-4_i Brain Non-cancer disease MERFISH 21,140 Source
GSM7709892_Panel1_CW20047D-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709892_Panel1_CW20047D-1_i Brain Non-cancer disease MERFISH 20,654 Source
GSM7709893_Panel1_CW20047D-1_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709893_Panel1_CW20047D-1_ii Brain Non-cancer disease MERFISH 10,126 Source
GSM7709894_Panel1_CW60218E-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709894_Panel1_CW60218E-3_i Brain Non-cancer disease MERFISH 8,666 Source
GSM7709895_Panel1_CW20050D-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709895_Panel1_CW20050D-1_i Brain Non-cancer disease MERFISH 40,435 Source
GSM7709896_Panel1_CW60230E-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709896_Panel1_CW60230E-3_i Brain Non-cancer disease MERFISH 34,692 Source
GSM7709897_Panel1_CW20051C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709897_Panel1_CW20051C-1_i Brain Non-cancer disease MERFISH 7,432 Source
GSM7709898_Panel1_CW60115F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709898_Panel1_CW60115F-1_i Brain Non-cancer disease MERFISH 17,873 Source
GSM7709899_Panel1_CW60171E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709899_Panel1_CW60171E-1_i Brain Non-cancer disease MERFISH 19,283 Source
GSM7709900_Panel1_CW20320C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709900_Panel1_CW20320C-1_i Brain Non-cancer disease MERFISH 26,829 Source
GSM7709901_Panel1_CW20324C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709901_Panel1_CW20324C-1_i Brain Non-cancer disease MERFISH 11,540 Source
GSM7709902_Panel1_CW60108A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709902_Panel1_CW60108A-1_i Brain Non-cancer disease MERFISH 6,987 Source
GSM7709903_Panel1_CW60134F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709903_Panel1_CW60134F-1_i Brain Non-cancer disease MERFISH 23,983 Source
GSM7709904_Panel1_CW60228D-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709904_Panel1_CW60228D-1_i Brain Non-cancer disease MERFISH 15,182 Source
GSM7709905_Panel1_CW20081F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709905_Panel1_CW20081F-1_i Brain Non-cancer disease MERFISH 25,765 Source
GSM7709906_Panel1_CW60109C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709906_Panel1_CW60109C-1_i Brain Non-cancer disease MERFISH 11,635 Source
GSM7709907_Panel1_CW60171E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709907_Panel1_CW60171E-2_i Brain Non-cancer disease MERFISH 28,490 Source
GSM7709908_Panel1_CW20324C-1_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709908_Panel1_CW20324C-1_ii Brain Non-cancer disease MERFISH 19,501 Source
GSM7709909_Panel1_CW20041A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709909_Panel1_CW20041A-1_i Brain Non-cancer disease MERFISH 40,008 Source
GSM7709910_Panel1_CW20002A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709910_Panel1_CW20002A-1_i Brain Non-cancer disease MERFISH 17,599 Source
GSM7709911_Panel1_CW60109C-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709911_Panel1_CW60109C-2_i Brain Non-cancer disease MERFISH 34,662 Source
GSM7709912_Panel1_CW60172A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709912_Panel1_CW60172A-1_i Brain Non-cancer disease MERFISH 5,960 Source
GSM7709913_Panel1_CW60245L-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709913_Panel1_CW60245L-1_i Brain Non-cancer disease MERFISH 26,197 Source
GSM8291572_Panel1_CW20047D-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM8291572_Panel1_CW20047D-2_i Brain Non-cancer disease MERFISH 36,027 Source
GSM8291573_Panel1_CW60171E-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM8291573_Panel1_CW60171E-2_ii Brain Non-cancer disease MERFISH 34,182 Source
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P10_On_slide_13 Liver Metastatic cancer CosMx 6,297 Source
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P10_On_slide_7 Liver Metastatic cancer CosMx 4,188 Source
GSM8876959_slide_10 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P10_Pre_slide_10 Liver Metastatic cancer CosMx 63,964 Source
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P11_On_slide_13 Liver Metastatic cancer CosMx 22,052 Source
GSM8876954_slide_5 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P11_On_slide_5 Liver Metastatic cancer CosMx 20,282 Source
GSM8876957_slide_8 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P11_On_slide_8 Liver Metastatic cancer CosMx 25,943 Source
GSM8876954_slide_5 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P11_Pre_slide_5 Liver Metastatic cancer CosMx 34,052 Source
GSM8876961_slide_12 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P12_On_slide_12 Lung Metastatic cancer CosMx 34,312 Source
GSM8876960_slide_11 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P12_Pre_slide_11 Lung Metastatic cancer CosMx 29,982 Source
GSM8876961_slide_12 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P12_Res_slide_12 Brain Metastatic cancer CosMx 549,308 Source
GSM8876959_slide_10 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P1_Late_slide_10 Liver Metastatic cancer CosMx 50,132 Source
GSM8876955_slide_6 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P1_On_slide_6 Liver Metastatic cancer CosMx 11,693 Source
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P1_Pre_slide_4 Liver Metastatic cancer CosMx 8,183 Source
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P1_Res_slide_4 Liver Metastatic cancer CosMx 19,198 Source
GSM8876960_slide_11 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_On_slide_11 Liver Metastatic cancer CosMx 22,518 Source
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_On_slide_4 Liver Metastatic cancer CosMx 7,258 Source
GSM8876958_slide_9 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_On_slide_9 Liver Metastatic cancer CosMx 28,756 Source
GSM8876950_slide_1 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_Pre_slide_1 Liver Metastatic cancer CosMx 27,230 Source
GSM8876955_slide_6 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P3_On_slide_6 Liver Metastatic cancer CosMx 18,570 Source
GSM8876955_slide_6 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P3_Pre_slide_6 Liver Metastatic cancer CosMx 1,899 Source
GSM8876963_slide_14 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P3_Res_slide_14 Liver Metastatic cancer CosMx 35,188 Source