scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches
Sample table columns
View by dataset
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
BRCA_35122013__IMC__MB-0630__core1__image99 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 133 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_C3,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 133 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__H41 BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 128 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_B4,3 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 127 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_C4,6 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 127 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0152__core1__image452 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 126 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_C1,7 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 125 T1T2T3T1T2T3T1T2T3
HCC_39304772__PCF_CODEX__c003_v001_r001_reg030 HCC_39304772 · PCF / CODEX / PhenoCycler Fusion Liver Primary cancer CODEX 119 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_2 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 118 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_C4,7 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 118 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_341 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 117 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_353 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 117 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_C6,10 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 117 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_274 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 116 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_B4,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 116 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0214__core1__image329 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 115 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0365__core1__image74 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 115 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_258 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 111 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0239__core1__image489 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 110 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0282__core1__image433 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 110 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_143_X1Y2__gate352 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 109 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_284_X8Y2__gate070 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 108 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_180_X6Y2__gate312 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 108 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_244_X4Y1__gate357 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 108 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_222_X8Y2__gate314 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 107 T1T2T3T1T2T3T1T2T3
CRC_32763154__PCF_CODEX__reg019_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 107 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0496__core1__image380 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 101 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0302__core1__image142 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 100 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_B2,2 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 100 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0214__core1__image443 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 99 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_65_X14Y6__gate379 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 98 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0193__core1__image333 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 94 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0654__core1__image82 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 94 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_287 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 94 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_299 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 91 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0623__core1__image5 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 90 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_282_X2Y3__gate086 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 89 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0388__core1__image258 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 89 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_A7,1 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 88 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_45_X4Y3__gate094 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 87 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0890__core2__image449 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 86 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_A1,4 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 86 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_218_X9Y4__gate073 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 85 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0162__core1__image515 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 85 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0880__core1__image526 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 85 T1T2T3T1T2T3T1T2T3
CRC_32763154__PCF_CODEX__reg067_B CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 85 T1T2T3T1T2T3T1T2T3
CRC_32763154__PCF_CODEX__reg057_A CRC_32763154 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 84 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_C5,9 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 84 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_312 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 83 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_329 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 82 T1T2T3T1T2T3T1T2T3