scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP42_162_X16Y7__gate141 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,143 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_163_X1Y9__gate224 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,690 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_164_X9Y8__gate156 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,719 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_167_X14Y8__gate133 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 351 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_169_X3Y8__gate225 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,455 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_16_X3Y4__gate240 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 523 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_16_X4Y4__gate244 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 221 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_171_X2Y7__gate220 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,801 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_174_X9Y6__gate158 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,567 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_175_X15Y5__gate139 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,329 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_175_X15Y5__gate140 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 668 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_176_X3Y7__gate226 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,769 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_178_X13Y7__gate130 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,966 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_179_X13Y8__gate129 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 5,186 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_181_X6Y5__gate195 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,992 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_182_X1Y8__gate230 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,667 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_183_X3Y6__gate227 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,236 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_184_X6Y8__gate192 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,380 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_185_X7Y5__gate199 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,427 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_188_X10Y5__gate163 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,617 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_189_X5Y5__gate191 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,482 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_190_X9Y5__gate159 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,686 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_192_X8Y5__gate203 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,893 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_198_X7Y8__gate196 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,607 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_208_X15Y7__gate137 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,832 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_210_X4Y5__gate233 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,488 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_215_X3Y1__gate243 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,223 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_215_X4Y1__gate247 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 159 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_217_X1Y3__gate249 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,843 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_217_X2Y3__gate239 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,060 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_223_X9Y7__gate157 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,535 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_229_X1Y7__gate234 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,053 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_232_X7Y6__gate198 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,437 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_236_X11Y7__gate165 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,716 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_240_X10Y2__gate181 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 628 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_240_X9Y2__gate176 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,523 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_251_X15Y2__gate149 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,722 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_251_X16Y2__gate152 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 436 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_253_X13Y2__gate145 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,369 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_253_X14Y2__gate147 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,319 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_25_X3Y2__gate242 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,870 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_25_X4Y2__gate246 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 328 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_261_X11Y6__gate166 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,354 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_262_X10Y8__gate160 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 218 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_264_X14Y5__gate136 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,181 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_265_X14Y1__gate153 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 141 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_273_X4Y7__gate231 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,914 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_273_X6Y7__gate193 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,872 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_275_X5Y4__gate204 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,811 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP42_275_X6Y4__gate208 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 53 T1T2T3T1T2T3T1T2T3 Curated