scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate025 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,734 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate084 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_239_X12Y3__gate001 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 73 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_247_X13Y6__gate032 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,687 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_249_X3Y9__gate124 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,164 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_24_X5Y2__gate098 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,143 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_24_X6Y2__gate062 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,162 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_254_X11Y6__gate060 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,909 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_255_X12Y8__gate040 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,840 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_256_X9Y7__gate053 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,112 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_257_X3Y1__gate092 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,682 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_259_X10Y3__gate078 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 3,676 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_263_X1Y4__gate102 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 324 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_263_X2Y4__gate085 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 684 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_267_X13Y8__gate030 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,867 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_268_X6Y7__gate044 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,382 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_274_X13Y1__gate008 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 528 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_274_X14Y1__gate013 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 599 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_276_X9Y8__gate052 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,068 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_277_X12Y6__gate042 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 664 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_280_X9Y5__gate072 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,909 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_282_X1Y3__gate108 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,406 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_282_X2Y3__gate086 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 89 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_282_X2Y3__gate087 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 68 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_283_X2Y6__gate111 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,534 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_284_X7Y2__gate066 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,236 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_284_X8Y2__gate070 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 108 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_2_X2Y8__gate109 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,688 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_31_X15Y2__gate017 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,312 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_31_X16Y2__gate022 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 207 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_33_X14Y6__gate035 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,556 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_37_X7Y6__gate048 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,872 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_38_X4Y7__gate116 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,412 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_39_X1Y7__gate120 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,524 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_40_X16Y7__gate038 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,662 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_41_X11Y8__gate058 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,223 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_42_X14Y5__gate009 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,719 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_44_X2Y7__gate110 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,187 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_45_X3Y3__gate090 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,949 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_45_X4Y3__gate094 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 87 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_48_X14Y8__gate033 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,718 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_52_X10Y2__gate079 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 9 Curated
BRCA_31959985__IMC__BaselTMA_SP41_52_X10Y2__gate080 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 18 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_52_X9Y3__gate074 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,892 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_53_X6Y8__gate043 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,150 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_55_X10Y7__gate056 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,635 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_57_X8Y6__gate051 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 1,248 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_58_X15Y1__gate018 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 4,347 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_58_X16Y1__gate023 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 521 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_60_X11Y7__gate059 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,309 T1T2T3T1T2T3T1T2T3 Curated