scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
Oral_41663813__Xenium__Oral_41663813_P4a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 7,668
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P8_Res_slide_7 Liver Metastatic cancer CosMx 7,576
GSM7709897_Panel1_CW20051C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709897_Panel1_CW20051C-1_i Brain Non-cancer disease MERFISH 7,432
GSM5910292_Panel2_CW60220F-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910292_Panel2_CW60220F-3_i Brain Non-cancer disease MERFISH 7,270
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_On_slide_4 Liver Metastatic cancer CosMx 7,258
Oral_41663813__Xenium__Oral_41663813_P13b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 7,208
GSM7709902_Panel1_CW60108A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709902_Panel1_CW60108A-1_i Brain Non-cancer disease MERFISH 6,987
GSM5910289_Panel1_CW60230E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910289_Panel1_CW60230E-2_i Brain Non-cancer disease MERFISH 6,717
Oral_41663813__Xenium__Oral_41663813_H4 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,658
Oral_41663813__Xenium__Oral_41663813_P5a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 6,610
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P10_On_slide_13 Liver Metastatic cancer CosMx 6,297
Oral_41663813__Xenium__Oral_41663813_H7a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,191
32G77_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_1 Musculoskeletal Non-cancer disease CosMx 6,145
G22G5_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_1 Musculoskeletal Non-cancer disease CosMx 6,016
GSM7709912_Panel1_CW60172A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709912_Panel1_CW60172A-1_i Brain Non-cancer disease MERFISH 5,960
32G77_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_2 Musculoskeletal Non-cancer disease CosMx 5,834
Oral_41663813__Xenium__Oral_41663813_H2b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 5,593
GSM5910314_Panel4_CW60040F-5_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910314_Panel4_CW60040F-5_i Brain Non-cancer disease MERFISH 5,132
Oral_41663813__Xenium__Oral_41663813_P9a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 5,014
GSM5910325_Panel4_CW20047D-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910325_Panel4_CW20047D-3_i Brain Non-cancer disease MERFISH 4,905
GSM5910315_Panel4_CW20012E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910315_Panel4_CW20012E-2_i Brain Non-cancer disease MERFISH 4,893
Oral_41663813__Xenium__Oral_41663813_P13a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 4,674
Oral_41663813__Xenium__Oral_41663813_H3b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,601
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P6_On_slide_13 Lung Metastatic cancer CosMx 4,592
G7G72_4 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_4 Musculoskeletal Non-cancer disease CosMx 4,525
Oral_41663813__Xenium__Oral_41663813_H3a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,247
cHL_41923627__MIBI_TOF__fov-6 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 4,210
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P10_On_slide_7 Liver Metastatic cancer CosMx 4,188
Oral_41663813__Xenium__Oral_41663813_P2c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 4,112
GSM8876951_slide_2 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P7_Pre_slide_2 Peritoneum Metastatic cancer CosMx 3,850
Oral_41663813__Xenium__Oral_41663813_P12b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 3,793
cHL_41923627__MIBI_TOF__fov-5 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,502
cHL_41923627__MIBI_TOF__fov-1 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,200
cHL_41923627__MIBI_TOF__fov-2 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,088
cHL_41923627__MIBI_TOF__fov-4 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,065
G2697_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G2697_1 Musculoskeletal Non-cancer disease CosMx 2,705
399G0_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__399G0_2 Musculoskeletal Non-cancer disease CosMx 2,642
G1532_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G1532_1 Musculoskeletal Non-cancer disease CosMx 2,553
cHL_41923627__MIBI_TOF__fov-3 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 2,311
Melanoma_40457060__CosMx_SMI__Tumor_2 Melanoma_40457060 · CosMx SMI / NanoString SMI Skin Primary cancer CosMx 2,248
32G77_5 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_5 Musculoskeletal Non-cancer disease CosMx 2,148
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P5_Res_slide_7 Liver Metastatic cancer CosMx 2,004
Oral_41663813__Xenium__Oral_41663813_P9d Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 1,954
GSM8876955_slide_6 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P3_Pre_slide_6 Liver Metastatic cancer CosMx 1,899
G22G5_4 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_4 Musculoskeletal Non-cancer disease CosMx 1,879
Oral_41663813__Xenium__Oral_41663813_P2d Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 1,787
G22G5_3 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_3 Musculoskeletal Non-cancer disease CosMx 1,228
399G0_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__399G0_1 Musculoskeletal Non-cancer disease CosMx 1,027
32G77_4 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_4 Musculoskeletal Non-cancer disease CosMx 1,014
G22G5_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_2 Musculoskeletal Non-cancer disease CosMx 930