scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BrainTumor_36725935__IMC__Glioma_095N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,366 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_096C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,164 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_096C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,169 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_096N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 329 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_097C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,759 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_097C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,816 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_097N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,072 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_098C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,417 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_099C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,773 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_099N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 738 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_100C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,454 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_100C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,695 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_100N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 974 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_101C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,769 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_101C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,874 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_101N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 867 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_102C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,325 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_102C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,688 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_102N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,577 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_103C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,691 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_103C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,205 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_103N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,165 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_104C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,738 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_104C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,368 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_104N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 973 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_105C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,020 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_105C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,217 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_105N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,618 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_106C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,010 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_106C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,172 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_106N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 781 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_107C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,833 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_108C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,960 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_108C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,236 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_109C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,937 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_109C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,724 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_110C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,225 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_110C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,998 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_111C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,054 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_111C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,449 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_112C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,177 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_113C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,393 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_114C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,783 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_115C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,532 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_115C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,789 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_116C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,993 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_117C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,828 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_117C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,052 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_118C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,442 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_118C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,761 T1T2T3T1T2T3T1T2T3 Curated