scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 3 matches · dataset view
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Customized columns 8
Dataset table columns Selections persist in the URL and manifest download.
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Organ: Peritoneum × 3 matches 2 curated
Dataset Organs ?For mixed datasets, fractions show sample counts per organ. Disease state ?Broad public sample state summarized across the dataset. Technique Samples Cells ?Number of individually resolved single-cell observations included for the dataset. Spatial module ?Spatial availability is summarized from module- and tier-level outputs for the dataset. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
HGSC_39179931 · CosMx SMI / NanoString SMI
HGSC_39179931__CosMx_SMI
Ovary 116/166 Peritoneum 50/166
Metastatic cancer 50/166 Primary cancer 116/166
CosMx 166 1,724,825
162/166
 Curated
HGSC_39179931 · Xenium
HGSC_39179931__Xenium
Ovary 16/32 Peritoneum 16/32
Metastatic cancer 16/32 Primary cancer 16/32
Xenium 32 447,874
32/32
 Curated
CRC_42167227 · CosMx SMI / NanoString SMI
CRC_42167227__CosMx_SMI
Brain 2/45 Liver 30/45 Lung 10/45 Peritoneum 3/45
Metastatic cancer 45
CosMx 45 1,874,376
0/45
 Source