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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
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Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
MERFISH_500_Vizgen__MERFISH__MERFISHMelanomaP2 MERFISH 500-plex Vizgen showcase Skin Primary cancer MERFISH 207,869
Liver_41986723__MERFISH__M8 Liver_41986723 · MERFISH / MERSCOPE Liver Healthy/control MERFISH 207,498
B-NHL_38379051__PCF_CODEX__191_2reg001 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 206,365
XeniumMulti_10xGenomics__Xenium__Xenium_V1_Human_Ovary_Cancer_FF Xenium Human Multi-Tissue and Cancer Panel showcase Ovary Primary cancer Xenium 205,082
B-NHL_38379051__PCF_CODEX__191_5reg002 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 203,531
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 201,955
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_Cancer_FF 10x Genomics Xenium Prime 5K showcase Ovary Primary cancer Xenium 200,900
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer 10x Genomics Visium HD showcase Ovary Primary cancer Visium HD 200,764
12 pcw selected area DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion DevelopingLung_39477961__PCF_CODEX__12w_selectedarea Lung Healthy/control CODEX 200,625
TNBC_38194915__PCF_CODEX__210201_Breast_Cassette1_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 200,217
B-NHL_38379051__PCF_CODEX__191_2reg004 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 200,175
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_r2 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 198,887
DKD_42056516__CosMx_SMI__HK3039 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Healthy/control CosMx 196,590
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Prostate_FFPE 10x Genomics Xenium Prime 5K showcase Prostate Primary cancer Xenium 193,000
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 192,898
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI2 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 191,024
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hPancreas_Cancer_Add_on_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Primary cancer Xenium 190,965
CosMx6k_Bruker__CosMx_SMI__CosMxFrontalCortex6k_Bruker Bruker CosMx 6k FFPE showcase Brain Healthy/control CosMx 188,686
DKD_42056516__CosMx_SMI__HK2844 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Non-cancer disease CosMx 186,643
MERFISH_960_Vizgen__MERFISH__MERFISH960HuBrainS3_R2 MERFISH 960-plex Vizgen showcase Brain Non-cancer disease MERFISH 186,623
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF 10x Genomics Visium HD showcase Ovary Primary cancer Visium HD 183,450
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth 10x Genomics Visium HD showcase Ovary Primary cancer Visium HD 183,449
B-NHL_38379051__PCF_CODEX__191_3reg003 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 181,205
B-NHL_38379051__PCF_CODEX__191_2reg007 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 181,135
DKD_42056516__CosMx_SMI__HK3565 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Healthy/control CosMx 179,861
B-NHL_38379051__PCF_CODEX__191_5reg004 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 179,598
B-NHL_38379051__PCF_CODEX__191_2reg002 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 176,664
ICC_41723121__CosMx_SMI__Liver_3CB LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 174,833
B-NHL_38379051__PCF_CODEX__191_2reg003 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 174,640
B-NHL_38379051__PCF_CODEX__191_3reg005 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 174,321
B-NHL_38379051__PCF_CODEX__191_5reg006 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 174,302
TNBC_38194915__PCF_CODEX__210113_Breast_Cassette11_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 173,460
B-NHL_38379051__PCF_CODEX__191_1reg002 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 172,066
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 171,606
DKD_42056516__Xenium__HK3106 DKD_42056516 · Xenium Kidney Healthy/control Xenium 171,526
GSM8876957_slide_8 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P4_Res_slide_8 Brain Metastatic cancer CosMx 171,124
Melanoma_41916292__CyCIF__PT35_3_On-Dab+Tra_Pre-Ipi Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 170,152
Atera_10xGenomics__Atera__WTA_Preview_FFPE_Breast_Cancer 10x Genomics Atera showcase Breast Primary cancer Atera 170,057
ARKFrozen-65-V1 Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__ARKFrozen-65-V1 Brain Healthy/control MERFISH 169,905
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 169,656
DLBCL_41120574__CosMx_SMI__F6_3 DLBCL_41120574 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 167,868
B-NHL_38379051__PCF_CODEX__191_4reg002 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 167,286
B-NHL_38379051__PCF_CODEX__191_5reg005 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 165,172
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Stereo-seq_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 165,142
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 165,128
B-NHL_38379051__PCF_CODEX__191_4reg007 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 164,496
TNBC_38194915__PCF_CODEX__210205_Breast_Cassette2_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 164,096
B-NHL_38379051__PCF_CODEX__191_3reg006 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 162,943
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_cancer_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Primary cancer Xenium 162,628
XeniumMulti_10xGenomics__Xenium__Xenium_V1_humanLung_Cancer_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Lung Primary cancer Xenium 162,254