scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
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All records 7,721 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P9_Pre_slide_7 Liver Metastatic cancer CosMx 46,583
Oral_41663813__Xenium__Oral_41663813_P14a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 45,548
PDAC_39227743__CosMx_SMI__PDAC_39227743_T5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,794
PDAC_39227743__CosMx_SMI__PDAC_39227743_T2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,658
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P5_On_slide_13 Liver Metastatic cancer CosMx 43,116
GSM9625561_A1R5 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625561_A1R5 Bladder Primary cancer Xenium 42,825
GBM_40972572__CosMx_SMI_protein__UM04 GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 42,658
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 42,432
Oral_41663813__Xenium__Oral_41663813_P14b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 40,763
GSM8876957_slide_8 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P9_On_slide_8 Liver Metastatic cancer CosMx 40,608
GSM7709895_Panel1_CW20050D-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709895_Panel1_CW20050D-1_i Brain Non-cancer disease MERFISH 40,435
GSM7709909_Panel1_CW20041A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709909_Panel1_CW20041A-1_i Brain Non-cancer disease MERFISH 40,008
HGSOC_38570491__CosMx_SMI__HGSOC_38570491_SP5_Run5452_S2 HGSOC_38570491 · CosMx SMI / NanoString SMI Ovary Primary cancer CosMx 39,959
GSM5910286_Panel1_CW60218E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910286_Panel1_CW60218E-1_i Brain Non-cancer disease MERFISH 38,964
GSM5910280_Panel1_CW60220F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910280_Panel1_CW60220F-1_i Brain Non-cancer disease MERFISH 38,263
GSM8291572_Panel1_CW20047D-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM8291572_Panel1_CW20047D-2_i Brain Non-cancer disease MERFISH 36,027
GSM8876952_slide_3 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P5_On_slide_3 Liver Metastatic cancer CosMx 35,761
GSM8876963_slide_14 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P3_Res_slide_14 Liver Metastatic cancer CosMx 35,188
Oral_41663813__Xenium__Oral_41663813_P8 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 35,013
GSM5910301_Panel3_CW60219E-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910301_Panel3_CW60219E-3_i Brain Non-cancer disease MERFISH 34,963
GSM5910306_Panel3_CW60230E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910306_Panel3_CW60230E-4_i Brain Non-cancer disease MERFISH 34,839
GSM7709896_Panel1_CW60230E-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709896_Panel1_CW60230E-3_i Brain Non-cancer disease MERFISH 34,692
GSM7709911_Panel1_CW60109C-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709911_Panel1_CW60109C-2_i Brain Non-cancer disease MERFISH 34,662
GSM5910295_Panel2_CW60219E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910295_Panel2_CW60219E-2_i Brain Non-cancer disease MERFISH 34,616
PDAC_39227743__CosMx_SMI__PDAC_39227743_U2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 34,334
GSM8876961_slide_12 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P12_On_slide_12 Lung Metastatic cancer CosMx 34,312
GSM5910284_Panel1_CW20053A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910284_Panel1_CW20053A-1_i Brain Non-cancer disease MERFISH 34,305
GSM8291573_Panel1_CW60171E-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM8291573_Panel1_CW60171E-2_ii Brain Non-cancer disease MERFISH 34,182
GSM5910305_Panel3_CW60219E-3_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910305_Panel3_CW60219E-3_ii Brain Non-cancer disease MERFISH 34,178
GSM8876952_slide_3 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P9_Pre_slide_3 Liver Metastatic cancer CosMx 34,124
GSM8876954_slide_5 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P11_Pre_slide_5 Liver Metastatic cancer CosMx 34,052
GSM5910313_Panel3_CW60040F-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910313_Panel3_CW60040F-4_i Brain Non-cancer disease MERFISH 33,896
GSM5910281_Panel1_CW60230E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910281_Panel1_CW60230E-1_i Brain Non-cancer disease MERFISH 33,845
PDAC_39227743__CosMx_SMI__PDAC_39227743_T3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 33,800
GSM5910322_Panel4_CW60219E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910322_Panel4_CW60219E-4_i Brain Non-cancer disease MERFISH 33,625
GSM5910324_Panel4_CW60219E-4_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910324_Panel4_CW60219E-4_ii Brain Non-cancer disease MERFISH 33,531
GSM8876963_slide_14 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P9_On_slide_14 Liver Metastatic cancer CosMx 32,200
GSM5910310_Panel3_CW60219E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910310_Panel3_CW60219E-4_i Brain Non-cancer disease MERFISH 31,932
GSM5910290_Panel1_CW60218E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910290_Panel1_CW60218E-2_i Brain Non-cancer disease MERFISH 31,875
PDAC_39227743__CosMx_SMI__PDAC_39227743_T1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 31,084
IgAN_38898271__Xenium__GSM8216268 IgAN_38898271 · Xenium Kidney Non-cancer disease Xenium 30,802
GSM8876952_slide_3 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P5_Pre_slide_3 Liver Metastatic cancer CosMx 30,131
GSM8876960_slide_11 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P12_Pre_slide_11 Lung Metastatic cancer CosMx 29,982
GSM9625559_A1R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625559_A1R2 Bladder Primary cancer Xenium 29,816
GSM8876958_slide_9 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_On_slide_9 Liver Metastatic cancer CosMx 28,756
Oral_41663813__Xenium__Oral_41663813_P1 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 28,555
GSM7709907_Panel1_CW60171E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709907_Panel1_CW60171E-2_i Brain Non-cancer disease MERFISH 28,490
GSM5910285_Panel1_CW20069F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910285_Panel1_CW20069F-1_i Brain Non-cancer disease MERFISH 27,708
Oral_41663813__Xenium__Oral_41663813_H8 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 27,704
GSM8876950_slide_1 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_Pre_slide_1 Liver Metastatic cancer CosMx 27,230