scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_16 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,636 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_17 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,813 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_18 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,198 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_42 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,414 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Tumor_bed_PDAC_Slide2_11 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,339 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Tumor_bed_PDAC_Slide2_12 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,730 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Tumor_bed_PDAC_Slide2_13 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,563 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Tumor_bed_PDAC_Slide2_14 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,351 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_10 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 918 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_41 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 673 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_6 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 380 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_7 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 578 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_8 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 812 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Juxtalesional_PDAC_Slide2_9 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 942 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_1 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 897 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_2 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 658 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_3 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 933 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_4 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 700 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_Pri_Tumor_bed_PDAC_Slide2_5 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 460 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__THD0008 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 36,781 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__THD0011 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 23,676 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD028MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 10,153 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD049LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 1,210 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD080MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 8,194 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD111LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 11,379 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD113MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 6,867 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD117LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 10,288 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD117MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 9,360 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD117MFB PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 6,166 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD130MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 4,181 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD167LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 1,213 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD175 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 15,866 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD299LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 11,055 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__TILD315LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 7,472 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD038 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 345 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD049 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 6,600 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD069 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 16,343 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD090 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 5,704 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD095 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 7,401 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD113 PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 7,098 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD116A PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 2,920 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUHD116B PulmonaryFibrosis_39901013 · Xenium Lung Healthy/control Xenium 8,126 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD102LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 24,925 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD102MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 30,425 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD104LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 20,781 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD104MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 23,998 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD105LF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 11,892 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD105MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 7,614 T1T2T3T1T2T3T1T2T3 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD106 PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 91,778 Curated
PulmonaryFibrosis_39901013__Xenium__VUILD107MF PulmonaryFibrosis_39901013 · Xenium Lung Non-cancer disease Xenium 30,615 T1T2T3T1T2T3T1T2T3 Curated