scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 7
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All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
OSCC_41707652__IMC__36 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,683 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__37 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,825 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__38 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,949 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__39 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,616 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__4 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,557 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__40 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,419 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__41 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,672 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__42 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 4,822 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__43 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,599 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__44 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,579 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__45 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,424 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__46 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,449 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__47 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,852 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__48 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,251 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__49 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,008 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__5 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,924 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__50 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,808 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__51 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,028 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__52 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,690 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__53 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,464 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__54 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,413 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__55 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,025 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__56 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,026 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__57 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,337 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__58 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,396 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__6 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,072 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__61 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,738 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__62 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,248 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__63 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,931 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__64 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,332 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__65 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,839 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__66 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 11,061 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__67 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,812 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__68 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,611 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__69 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,242 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__7 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,213 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__70 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,848 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__71 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,959 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__72 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,630 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__73 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,209 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__74 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,671 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__75 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,970 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__76 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,915 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__77 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,646 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__78 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,091 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__79 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,938 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__8 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,309 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__80 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,179 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__81 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,484 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__82 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,934 T1T2T3T1T2T3T1T2T3 Curated