scAtria single-cell spatial atlas resource

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7,721 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_23 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 986 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_24 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,195 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_42 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 955 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_15 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,266 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_16 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,341 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_17 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 873 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_18 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,289 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_19 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,626 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Tumor_bed_PDAC_Slide1_43 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,258 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_10 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 699 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_11 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 958 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_12 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_13 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_14 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_6 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 666 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_7 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 701 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_8 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 520 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_9 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 433 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_1 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,026 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_2 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,084 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_3 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 872 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_4 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 905 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_41 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 585 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Tumor_bed_PDAC_Slide1_5 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 451 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Juxtalesional_PDAC_Slide2_26 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 319 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Juxtalesional_PDAC_Slide2_27 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,017 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Juxtalesional_PDAC_Slide2_28 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,375 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Juxtalesional_PDAC_Slide2_29 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 855 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Juxtalesional_PDAC_Slide2_30 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 718 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Juxtalesional_PDAC_Slide2_43 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,036 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Tumor_bed_PDAC_Slide2_21 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 876 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Tumor_bed_PDAC_Slide2_22 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 613 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Tumor_bed_PDAC_Slide2_23 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 2,050 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Tumor_bed_PDAC_Slide2_24 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,508 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Tumor_bed_PDAC_Slide2_25 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 886 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-13_Pri_Tumor_bed_PDAC_Slide2_44 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 2,461 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Juxtalesional_PDAC_Slide2_36 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,294 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Juxtalesional_PDAC_Slide2_37 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,124 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Juxtalesional_PDAC_Slide2_38 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 743 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Juxtalesional_PDAC_Slide2_39 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 818 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Juxtalesional_PDAC_Slide2_40 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 739 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Juxtalesional_PDAC_Slide2_45 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,013 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_31 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,271 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_32 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,333 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_33 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,148 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_34 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 950 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-1_Tumor_bed_PDAC_Slide2_35 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 868 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Distant_PDAC_Slide2_19 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,504 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Distant_PDAC_Slide2_20 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,476 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_2_Pt-5_LiM-2_Juxtalesional_PDAC_Slide2_15 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,141 T1T2T3T1T2T3T1T2T3 Curated