scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,761 Samples
Search ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,761 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,761 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
TNBC_38194915__PCF_CODEX__210127_Breast_Cassette9_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 85,931 Curated
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 169,656 Curated
TNBC_38194915__PCF_CODEX__210129_Breast_Cassette4_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 56,452 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210201_Breast_Cassette1_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 200,217 Curated
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 91,354 Curated
TNBC_38194915__PCF_CODEX__210203_Breast_Cassette8_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 113,756 Curated
TNBC_38194915__PCF_CODEX__210205_Breast_Cassette2_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 164,096 Curated
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 62,214 Curated
TNBC_38194915__PCF_CODEX__210208_Breast_Cassette6_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 171,606 Curated
TNBC_38194915__PCF_CODEX__210209_Breast_Cassette3_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 34,025 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210209_Breast_Cassette3_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 28,998 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210210_Breast_Cassette10_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 49,826 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210210_Breast_Cassette10_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 24,928 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 54,582 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 47,065 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 56,084 T1T2T3T1T2T3T1T2T3 Curated
TNBC_38194915__PCF_CODEX__210215_Breast_Cassette12_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 156,001 Curated
TNBC_38194915__PCF_CODEX__210217_Breast_Cassette13_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 100,851 Curated
TNBC_38194915__PCF_CODEX__210217_Breast_Cassette13_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 61,853 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV1 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,113 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV10 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,674 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV11 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,158 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV12 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,267 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV13 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,705 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV14 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 998 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV15 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,168 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV16 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,331 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV17 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,806 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV18 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,188 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV19 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,269 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV2 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,495 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV20 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 3,351 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV21 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 656 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV22 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,445 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV24 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,815 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV25 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 708 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV26 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,303 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV27 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,985 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV28 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,515 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV29 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,407 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV3 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,258 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV30 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 2,007 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV31 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 827 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV32 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,753 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV34 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 845 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV35 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,597 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV36 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 931 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV37 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,383 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV38 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,828 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV4 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,625 T1T2T3T1T2T3T1T2T3 Curated