scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 2,170 matches · sample view
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Customized columns 7
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Organ: Lymph node metastasis × 2,170 matches 2,170 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg007 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 1,016 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg008 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 3,061 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg009 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 2,700 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg014 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 1,914 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg015 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 3,440 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg020 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 2,501 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg021 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 5,249 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg050 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 1,241 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg052 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,829 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg061 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 2,503 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg062 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 5,313 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg063 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 7,514 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg075 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 1,218 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg077 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 999 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg086 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 9,018 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg087 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 7,872 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S1reg088 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 7,759 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg001 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 6,364 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg011 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 2,352 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg012 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,283 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg013 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 5,965 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg022 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 2,205 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg023 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 5,090 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg024 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 5,467 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg029 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 2,773 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg030 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 5,054 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg031 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 7,058 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg033 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 2,957 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg034 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 5,632 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg035 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 8,345 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg040 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,370 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg041 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 1,132 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg046 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 3,502 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg047 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 6,163 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg048 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,662 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg053 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 1,115 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg054 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 7,153 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg063 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,928 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg064 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,626 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg065 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 4,408 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg067 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 8,850 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg068 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 10,456 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg074 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 6,781 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg075 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 9,261 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg080 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 5,442 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg081 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 1,582 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__521_S2reg082 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 9,583 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__522_S1reg004 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 1,095 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__522_S1reg005 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 1,014 T1T2T3T1T2T3T1T2T3 Curated
HNSCCDiscovery_41616773__PCF_CODEX__522_S1reg006 HNSCC_41616773 PCF discovery cohort Lymph node metastasis Metastatic cancer CODEX 7,827 T1T2T3T1T2T3T1T2T3 Curated