scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 6
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All records 7,721 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
Oral_41663813__Xenium__Oral_41663813_P4a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 7,668
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P8_Res_slide_7 Liver Metastatic cancer CosMx 7,576
GSM7709897_Panel1_CW20051C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709897_Panel1_CW20051C-1_i Brain Non-cancer disease MERFISH 7,432
GSM5910292_Panel2_CW60220F-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910292_Panel2_CW60220F-3_i Brain Non-cancer disease MERFISH 7,270
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_On_slide_4 Liver Metastatic cancer CosMx 7,258
Oral_41663813__Xenium__Oral_41663813_P13b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 7,208
GSM7709902_Panel1_CW60108A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709902_Panel1_CW60108A-1_i Brain Non-cancer disease MERFISH 6,987
GSM5910289_Panel1_CW60230E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910289_Panel1_CW60230E-2_i Brain Non-cancer disease MERFISH 6,717
Oral_41663813__Xenium__Oral_41663813_H4 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,658
Oral_41663813__Xenium__Oral_41663813_P5a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 6,610
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P10_On_slide_13 Liver Metastatic cancer CosMx 6,297
Oral_41663813__Xenium__Oral_41663813_H7a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 6,191
32G77_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_1 Musculoskeletal Non-cancer disease CosMx 6,145
G22G5_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_1 Musculoskeletal Non-cancer disease CosMx 6,016
GSM7709912_Panel1_CW60172A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709912_Panel1_CW60172A-1_i Brain Non-cancer disease MERFISH 5,960
32G77_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_2 Musculoskeletal Non-cancer disease CosMx 5,834
Oral_41663813__Xenium__Oral_41663813_H2b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 5,593
GSM5910314_Panel4_CW60040F-5_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910314_Panel4_CW60040F-5_i Brain Non-cancer disease MERFISH 5,132
Oral_41663813__Xenium__Oral_41663813_P9a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 5,014
GSM5910325_Panel4_CW20047D-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910325_Panel4_CW20047D-3_i Brain Non-cancer disease MERFISH 4,905
GSM5910315_Panel4_CW20012E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910315_Panel4_CW20012E-2_i Brain Non-cancer disease MERFISH 4,893
Oral_41663813__Xenium__Oral_41663813_P13a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 4,674
Oral_41663813__Xenium__Oral_41663813_H3b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,601
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P6_On_slide_13 Lung Metastatic cancer CosMx 4,592
G7G72_4 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_4 Musculoskeletal Non-cancer disease CosMx 4,525
Oral_41663813__Xenium__Oral_41663813_H3a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 4,247
cHL_41923627__MIBI_TOF__fov-6 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 4,210
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P10_On_slide_7 Liver Metastatic cancer CosMx 4,188
Oral_41663813__Xenium__Oral_41663813_P2c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 4,112
GSM8876951_slide_2 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P7_Pre_slide_2 Peritoneum Metastatic cancer CosMx 3,850
Oral_41663813__Xenium__Oral_41663813_P12b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 3,793
cHL_41923627__MIBI_TOF__fov-5 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,502
cHL_41923627__MIBI_TOF__fov-1 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,200
cHL_41923627__MIBI_TOF__fov-2 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,088
cHL_41923627__MIBI_TOF__fov-4 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 3,065
G2697_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G2697_1 Musculoskeletal Non-cancer disease CosMx 2,705
399G0_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__399G0_2 Musculoskeletal Non-cancer disease CosMx 2,642
G1532_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G1532_1 Musculoskeletal Non-cancer disease CosMx 2,553
cHL_41923627__MIBI_TOF__fov-3 cHL_41923627 · MIBI-TOF / Multiplexed Ion Beam Imaging Lymphoid tissue Primary cancer MIBI 2,311
Melanoma_40457060__CosMx_SMI__Tumor_2 Melanoma_40457060 · CosMx SMI / NanoString SMI Skin Primary cancer CosMx 2,248
32G77_5 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_5 Musculoskeletal Non-cancer disease CosMx 2,148
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P5_Res_slide_7 Liver Metastatic cancer CosMx 2,004
Oral_41663813__Xenium__Oral_41663813_P9d Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 1,954
GSM8876955_slide_6 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P3_Pre_slide_6 Liver Metastatic cancer CosMx 1,899
G22G5_4 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_4 Musculoskeletal Non-cancer disease CosMx 1,879
Oral_41663813__Xenium__Oral_41663813_P2d Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 1,787
G22G5_3 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_3 Musculoskeletal Non-cancer disease CosMx 1,228
399G0_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__399G0_1 Musculoskeletal Non-cancer disease CosMx 1,027
32G77_4 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_4 Musculoskeletal Non-cancer disease CosMx 1,014
G22G5_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_2 Musculoskeletal Non-cancer disease CosMx 930