Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches
Sample table columns
View by dataset
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
Neuroblastoma_41918107__PCF_CODEX__Neuro_c3__TMA3__core_26 Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion Adrenal gland Primary cancer CODEX 54,952 T1T2T3T1T2T3T1T2T3
SpinalCord_38513664__ISS__EAE_PEAK_B_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 54,943 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 54,582 T1T2T3T1T2T3T1T2T3
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R3 MERFISH 815-plex Vizgen showcase Breast Primary cancer MERFISH 54,279 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Rochester_6_pos cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 54,202 T1T2T3T1T2T3T1T2T3
B010_Proximal jejunum Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion Intestine_37468586__PCF_CODEX__B010_Proximal jejunum Small intestine Healthy/control CODEX 54,111 T1T2T3T1T2T3T1T2T3
DKD_42056516__CosMx_SMI__HK3626 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Healthy/control CosMx 54,046 T1T2T3T1T2T3T1T2T3
SpinalCord_38513664__ISS__CNTRL_PEAK_B_R4 SpinalCord_38513664 · ISS / In Situ Sequencing Spinal cord Non-cancer disease ISS 52,884 T1T2T3T1T2T3T1T2T3
NIH-4365-BA10 Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__NIH-4365-BA10 Brain Healthy/control MERFISH 52,483 T1T2T3T1T2T3T1T2T3
DKD_42056516__CosMx_SMI__HK2874 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Non-cancer disease CosMx 52,399 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__SB67_NBM39_H41_CODEX_Mesmer BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 52,102 T1T2T3T1T2T3T1T2T3
B012_Sigmoid Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion Intestine_37468586__PCF_CODEX__B012_Sigmoid Small intestine Healthy/control CODEX 51,593 T1T2T3T1T2T3T1T2T3
B005_Descending Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion Intestine_37468586__PCF_CODEX__B005_Descending Large intestine Healthy/control CODEX 51,294 T1T2T3T1T2T3T1T2T3
ARKFrozen-62-PFC Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__ARKFrozen-62-PFC Brain Healthy/control MERFISH 51,074 T1T2T3T1T2T3T1T2T3
B008_Mid jejunum Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion Intestine_37468586__PCF_CODEX__B008_Mid jejunum Small intestine Healthy/control CODEX 50,954 T1T2T3T1T2T3T1T2T3
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Pancreas 10x Genomics Visium HD showcase Pancreas Healthy/control Visium HD 50,897 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_14 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 50,868 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Rochester_7_pos cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 50,817 T1T2T3T1T2T3T1T2T3
Neuroblastoma_41918107__PCF_CODEX__Neuro_c3__TMA3__core_22 Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion Adrenal gland Primary cancer CODEX 50,801 T1T2T3T1T2T3T1T2T3
DKD_42056516__CosMx_SMI__HK3591 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Healthy/control CosMx 50,742 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210210_Breast_Cassette10_reg1_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 49,826 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Tubingen_20_pos cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 49,550 T1T2T3T1T2T3T1T2T3
HNSCCHealthyLN_41616773__PCF_CODEX__D13 HNSCC_41616773 PCF healthy lymph node cohort Lymphoid tissue Healthy/control CODEX 49,332 T1T2T3T1T2T3T1T2T3
MERFISH_815_Vizgen__MERFISH__MERFISH815BreastTMA_R2 MERFISH 815-plex Vizgen showcase Breast Primary cancer MERFISH 48,900 T1T2T3T1T2T3T1T2T3
Intestine_39843748__Xenium__GSE280895_human__human_09_r2 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 48,868 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Tubingen_33_neg cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 48,647 T1T2T3T1T2T3T1T2T3
B009_Proximal jejunum Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion Intestine_37468586__PCF_CODEX__B009_Proximal jejunum Small intestine Healthy/control CODEX 48,517 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Rochester_8_pos cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 48,440 T1T2T3T1T2T3T1T2T3
NormalSkin_41872488__MERFISH__202306121431_AH21-NS-ConcClear-061223_VMSC02301_region_0 NormalSkin_41872488 · MERFISH / MERSCOPE Skin Healthy/control MERFISH 48,053 T1T2T3T1T2T3T1T2T3
CML_41592325__PCF_CODEX__SchuerchCMLBM_c006_v001_r002_reg005 CML_41592325 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 47,737 T1T2T3T1T2T3T1T2T3
UCSF2018-003-MFG Neocortex_39779846 · MERFISH / MERSCOPE Neocortex_39779846__MERFISH__UCSF2018-003-MFG Brain Healthy/control MERFISH 47,632 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Tubingen_25_pos cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 47,557 T1T2T3T1T2T3T1T2T3
TNBC_38194915__PCF_CODEX__210212_Breast_Cassette17_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 47,065 T1T2T3T1T2T3T1T2T3
Neuroblastoma_41918107__PCF_CODEX__Neuro_c1__TMA1__core_3 Neuroblastoma_41918107 · PCF / CODEX / PhenoCycler Fusion Adrenal gland Primary cancer CODEX 46,656 T1T2T3T1T2T3T1T2T3
DKD_42056516__CosMx_SMI__HK3069 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Non-cancer disease CosMx 46,525 T1T2T3T1T2T3T1T2T3
CutaneousLeishmaniasis_40371647__CosMx_SMI__P3 CutaneousLeishmaniasis_40371647 · CosMx SMI / NanoString SMI Skin Non-cancer disease CosMx 46,226 T1T2T3T1T2T3T1T2T3
B-NHL_38379051__PCF_CODEX__191_1reg004 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 46,106 T1T2T3T1T2T3T1T2T3
HNSCCValidation_41616773__PCF_CODEX__E8 HNSCC_41616773 PCF validation cohort Lymphoid tissue Healthy/control CODEX 45,890 T1T2T3T1T2T3T1T2T3
DLBCL_41874448__PCF_CODEX__DLBCL_41874448_Rochester_17 DLBCL_41874448 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 45,766 T1T2T3T1T2T3T1T2T3
VisiumHD_p2_WholeSlide__Visium_HD__Visium_HD_6p5mm_Human_Heart 10x Genomics Visium HD p2 WholeSlide showcase Heart Healthy/control Visium HD 45,616 T1T2T3T1T2T3T1T2T3
DKD_42056516__Xenium__1006 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 45,609 T1T2T3T1T2T3T1T2T3
HNSCCHealthyLN_41616773__PCF_CODEX__D4 HNSCC_41616773 PCF healthy lymph node cohort Lymphoid tissue Healthy/control CODEX 45,582 T1T2T3T1T2T3T1T2T3
cHL_41923627__PCF_CODEX__Tubingen_16_neg cHL_41923627 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 44,963 T1T2T3T1T2T3T1T2T3
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Alzheimers_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Healthy/control Xenium 44,955 T1T2T3T1T2T3T1T2T3
HNSCCHealthyLN_41616773__PCF_CODEX__D5 HNSCC_41616773 PCF healthy lymph node cohort Lymphoid tissue Healthy/control CODEX 44,886 T1T2T3T1T2T3T1T2T3
CML_41592325__PCF_CODEX__SchuerchCMLBM_c006_v001_r002_reg004 CML_41592325 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 44,796 T1T2T3T1T2T3T1T2T3
CML_41592325__PCF_CODEX__SchuerchCMLBM_c003_v001_r001_reg004 CML_41592325 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 44,713 T1T2T3T1T2T3T1T2T3
Intestine_39843748__Xenium__GSE280895_human__human_09_r1 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 44,654 T1T2T3T1T2T3T1T2T3
CML_41592325__PCF_CODEX__SchuerchCMLBM_c004_v001_r002_reg004 CML_41592325 · PCF / CODEX / PhenoCycler Fusion Bone marrow Primary cancer CODEX 44,252 T1T2T3T1T2T3T1T2T3
B004_Duodenum Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion Intestine_37468586__PCF_CODEX__B004_Duodenum Small intestine Healthy/control CODEX 44,170 T1T2T3T1T2T3T1T2T3