scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
G1532_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G1532_2 Musculoskeletal Non-cancer disease CosMx 873
BRCA_31959985__IMC__BaselTMA_SP41_52_X10Y2__gate079 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 9
BRCA_35122013__IMC__MB-0471__core1__image104 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 7
HNSCCHealthyLN_41616773__PCF_CODEX__A12 HNSCC_41616773 PCF healthy lymph node cohort Lymphoid tissue Healthy/control CODEX 6
NSCLC_38242124__IMC__178_C5,12 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 5
BoneMarrow_38714197__PCF_CODEX__H36 BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 4
CRC_41986711__CosMx_SMI__FOV_268 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 4
CRC_41986711__CosMx_SMI__FOV_7 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 4
BrainTumor_36725935__IMC__BrM_013C2A BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 0
BrainTumor_36725935__IMC__BrM_013C2B BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 0
BrainTumor_36725935__IMC__BrM_046C1A BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 0
BrainTumor_36725935__IMC__BrM_046C1B BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 0
BrainTumor_36725935__IMC__BrM_046C2A BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 0
BrainTumor_36725935__IMC__BrM_046C2B BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Metastatic cancer IMC 0
LUAD_36725934__IMC__LUAD_D304 LUAD_36725934 · IMC / Imaging Mass Cytometry Lung Primary cancer IMC 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_28 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_32 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_25 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_12 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_13 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_Pri_Juxtalesional_PDAC_Slide1_14 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0