scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV40 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,726 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV41 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 3,257 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV44 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,804 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV45 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,386 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV46 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,403 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV47 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 862 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV48 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,804 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV49 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,499 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV5 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,739 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV50 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,962 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV51 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,247 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV53 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,370 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV54 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 712 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV55 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,254 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV56 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,889 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV57 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,523 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV58 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 2,600 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV59 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 3,182 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV6 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,620 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV60 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,464 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV61 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,354 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV62 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,706 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV63 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,183 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV64 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,310 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV65 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,668 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV66 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,305 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV67 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,462 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV7 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 963 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV70 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,075 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV71 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,515 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV72 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,829 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV73 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,486 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV74 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,829 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV75 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,573 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV76 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 854 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV77 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 631 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV78 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 1,312 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV79 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,223 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV8 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 2,527 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV80 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Non-cancer disease CosMx 3,145 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV81 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 1,834 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun2_38374043__CosMx_SMI__Run2__FOV9 UlcerativeColitis_38374043 CosMx 1000-plex Run 2 Longitudinal Large intestine Healthy/control CosMx 870 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV1 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,964 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV11 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,257 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV13 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 3,170 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV14 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 3,475 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV15 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,946 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV16 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,666 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV17 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,829 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV18 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,527 T1T2T3T1T2T3T1T2T3 Curated