scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
GSM8876956_slide_7 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P9_Pre_slide_7 Liver Metastatic cancer CosMx 46,583
Oral_41663813__Xenium__Oral_41663813_P14a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 45,548
PDAC_39227743__CosMx_SMI__PDAC_39227743_T5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,794
PDAC_39227743__CosMx_SMI__PDAC_39227743_T2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,658
GSM8876962_slide_13 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P5_On_slide_13 Liver Metastatic cancer CosMx 43,116
GSM9625561_A1R5 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625561_A1R5 Bladder Primary cancer Xenium 42,825
GBM_40972572__CosMx_SMI_protein__UM04 GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 42,658
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 42,432
Oral_41663813__Xenium__Oral_41663813_P14b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 40,763
GSM8876957_slide_8 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P9_On_slide_8 Liver Metastatic cancer CosMx 40,608
GSM7709895_Panel1_CW20050D-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709895_Panel1_CW20050D-1_i Brain Non-cancer disease MERFISH 40,435
GSM7709909_Panel1_CW20041A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709909_Panel1_CW20041A-1_i Brain Non-cancer disease MERFISH 40,008
HGSOC_38570491__CosMx_SMI__HGSOC_38570491_SP5_Run5452_S2 HGSOC_38570491 · CosMx SMI / NanoString SMI Ovary Primary cancer CosMx 39,959
GSM5910286_Panel1_CW60218E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910286_Panel1_CW60218E-1_i Brain Non-cancer disease MERFISH 38,964
GSM5910280_Panel1_CW60220F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910280_Panel1_CW60220F-1_i Brain Non-cancer disease MERFISH 38,263
GSM8291572_Panel1_CW20047D-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM8291572_Panel1_CW20047D-2_i Brain Non-cancer disease MERFISH 36,027
GSM8876952_slide_3 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P5_On_slide_3 Liver Metastatic cancer CosMx 35,761
GSM8876963_slide_14 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P3_Res_slide_14 Liver Metastatic cancer CosMx 35,188
Oral_41663813__Xenium__Oral_41663813_P8 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 35,013
GSM5910301_Panel3_CW60219E-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910301_Panel3_CW60219E-3_i Brain Non-cancer disease MERFISH 34,963
GSM5910306_Panel3_CW60230E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910306_Panel3_CW60230E-4_i Brain Non-cancer disease MERFISH 34,839
GSM7709896_Panel1_CW60230E-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709896_Panel1_CW60230E-3_i Brain Non-cancer disease MERFISH 34,692
GSM7709911_Panel1_CW60109C-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709911_Panel1_CW60109C-2_i Brain Non-cancer disease MERFISH 34,662
GSM5910295_Panel2_CW60219E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910295_Panel2_CW60219E-2_i Brain Non-cancer disease MERFISH 34,616
PDAC_39227743__CosMx_SMI__PDAC_39227743_U2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 34,334
GSM8876961_slide_12 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P12_On_slide_12 Lung Metastatic cancer CosMx 34,312
GSM5910284_Panel1_CW20053A-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910284_Panel1_CW20053A-1_i Brain Non-cancer disease MERFISH 34,305
GSM8291573_Panel1_CW60171E-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM8291573_Panel1_CW60171E-2_ii Brain Non-cancer disease MERFISH 34,182
GSM5910305_Panel3_CW60219E-3_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910305_Panel3_CW60219E-3_ii Brain Non-cancer disease MERFISH 34,178
GSM8876952_slide_3 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P9_Pre_slide_3 Liver Metastatic cancer CosMx 34,124
GSM8876954_slide_5 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P11_Pre_slide_5 Liver Metastatic cancer CosMx 34,052
GSM5910313_Panel3_CW60040F-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910313_Panel3_CW60040F-4_i Brain Non-cancer disease MERFISH 33,896
GSM5910281_Panel1_CW60230E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910281_Panel1_CW60230E-1_i Brain Non-cancer disease MERFISH 33,845
PDAC_39227743__CosMx_SMI__PDAC_39227743_T3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 33,800
GSM5910322_Panel4_CW60219E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910322_Panel4_CW60219E-4_i Brain Non-cancer disease MERFISH 33,625
GSM5910324_Panel4_CW60219E-4_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910324_Panel4_CW60219E-4_ii Brain Non-cancer disease MERFISH 33,531
GSM8876963_slide_14 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P9_On_slide_14 Liver Metastatic cancer CosMx 32,200
GSM5910310_Panel3_CW60219E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910310_Panel3_CW60219E-4_i Brain Non-cancer disease MERFISH 31,932
GSM5910290_Panel1_CW60218E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910290_Panel1_CW60218E-2_i Brain Non-cancer disease MERFISH 31,875
PDAC_39227743__CosMx_SMI__PDAC_39227743_T1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 31,084
IgAN_38898271__Xenium__GSM8216268 IgAN_38898271 · Xenium Kidney Non-cancer disease Xenium 30,802
GSM8876952_slide_3 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P5_Pre_slide_3 Liver Metastatic cancer CosMx 30,131
GSM8876960_slide_11 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P12_Pre_slide_11 Lung Metastatic cancer CosMx 29,982
GSM9625559_A1R2 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625559_A1R2 Bladder Primary cancer Xenium 29,816
GSM8876958_slide_9 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_On_slide_9 Liver Metastatic cancer CosMx 28,756
Oral_41663813__Xenium__Oral_41663813_P1 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 28,555
GSM7709907_Panel1_CW60171E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709907_Panel1_CW60171E-2_i Brain Non-cancer disease MERFISH 28,490
GSM5910285_Panel1_CW20069F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910285_Panel1_CW20069F-1_i Brain Non-cancer disease MERFISH 27,708
Oral_41663813__Xenium__Oral_41663813_H8 Oral_41663813 · Xenium Head and neck Healthy/control Xenium 27,704
GSM8876950_slide_1 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P2_Pre_slide_1 Liver Metastatic cancer CosMx 27,230