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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_OV SPATCH_41107232 · CosMx SMI / NanoString SMI Ovary Primary cancer CosMx 289,272
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 285,367
XeniumLung_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 278,659
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE 10x Genomics Xenium Prime 5K showcase Lung Primary cancer Xenium 278,328
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI_r2 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 274,464
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_Ctrl Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 272,699
SPATCH_41107232__Xenium__SPATCH_Xenium_HCC SPATCH_41107232 · Xenium Liver Primary cancer Xenium 271,687
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 266,625
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 264,005
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_Xenium_OV SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Ovary Primary cancer CODEX 263,757
Melanoma_41916292__CyCIF__PT42_6_Post-Pembro-2 Melanoma_41916292 · CyCIF / Cyclic IF Skin Primary cancer CyCIF 262,552
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF 10x Genomics Visium HD showcase Ovary Primary cancer Visium HD 258,911
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Ovarian_Cancer_FF_Min_Depth 10x Genomics Visium HD showcase Ovary Primary cancer Visium HD 258,896
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI_r2 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 258,269
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 255,440
TNBC_38194915__PCF_CODEX__210125_Breast_Cassette5_reg2_v5 TNBC_38194915 · PCF / CODEX / PhenoCycler Fusion Breast Primary cancer CODEX 254,687
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 254,480
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice1 MERFISH 500-plex Vizgen showcase Ovary Primary cancer MERFISH 254,347
Visium_HD_10xGenomics__Visium_HD__Visium_HD_3prime_Human_Pancreatic_Cancer 10x Genomics Visium HD showcase Pancreas Primary cancer Visium HD 252,214
HCC_41723121__CosMx_SMI__Liver_1HT LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 251,694
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 251,218
SPATCH_41107232__PCF_CODEX__SPATCH_PCF_CosMx_COAD SPATCH_41107232 · PCF / CODEX / PhenoCycler Fusion Large intestine Primary cancer CODEX 251,078
HGSC_39179931__MERFISH__MER_TB23359 HGSC_39179931 · MERFISH / MERSCOPE Ovary Primary cancer MERFISH 250,526
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ovarian_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Ovary Primary cancer Xenium 247,636
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI1 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 242,156
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI_r2 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 241,781
HCC_41723121__CosMx_SMI__Liver_2HT LiverCancer_41723121 HCC cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 240,021
Intestine_39843748__Xenium__GSE280895_perturb__SI_2 Intestine_39843748 · Xenium Small intestine Healthy/control Xenium 239,393
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_nondiseased_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Healthy/control Xenium 239,271
SPATCH_41107232__CosMx_SMI__SPATCH_CosMx_HCC SPATCH_41107232 · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 237,030
Intestine_39843748__MERFISH__GSE280895_tgfb__WT Intestine_39843748 · MERFISH / MERSCOPE Small intestine Healthy/control MERFISH 235,495
ICC_41723121__CosMx_SMI__Liver_1CT LiverCancer_41723121 iCCA cohort · CosMx SMI / NanoString SMI Liver Primary cancer CosMx 235,181
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ductal_Adenocarcinoma_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Pancreas Primary cancer Xenium 235,099
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Colon_Cancer 10x Genomics Visium HD p2 TissueArray showcase Large intestine Primary cancer Visium HD 234,929
Intestine_39843748__MERFISH__GSE280895_tgfb__KO Intestine_39843748 · MERFISH / MERSCOPE Small intestine Healthy/control MERFISH 234,586
BoneMarrow_38714197__PCF_CODEX__SB67_NBM27_H10_CODEX_Mesmer BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 234,104
DKD_42056516__CosMx_SMI__Pediatric1 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Healthy/control CosMx 229,669
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE 10x Genomics Visium HD showcase Prostate Primary cancer Visium HD 227,257
B-NHL_38379051__PCF_CODEX__191_5reg003 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 227,240
B-NHL_38379051__PCF_CODEX__191_2reg006 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 227,081
B-NHL_38379051__PCF_CODEX__191_4reg001 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 226,788
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_acute_lymphoid_leukemia_section Xenium Human Multi-Tissue and Cancer Panel showcase Bone marrow Primary cancer Xenium 225,906
B-NHL_38379051__PCF_CODEX__191_2reg008 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 225,604
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 220,703
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 217,921
B-NHL_38379051__PCF_CODEX__191_5reg001 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 214,017
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice3 MERFISH 500-plex Vizgen showcase Ovary Primary cancer MERFISH 212,425
B-NHL_38379051__PCF_CODEX__191_2reg005 B-NHL_38379051 · PCF / CODEX / PhenoCycler Fusion Lymphoid tissue Primary cancer CODEX 212,240
HGSC_39179931__CosMx_SMI__HGSC2 HGSC_39179931 · CosMx SMI / NanoString SMI Ovary Primary cancer CosMx 211,472
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 209,467