scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
PDAC_41916312__Xenium__AF-2693_SNV_PDAC_PANCREAS__Region_3 PDAC_41916312 · Xenium Pancreas Primary cancer Xenium 77,695 Source
32G77_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_1 Musculoskeletal Non-cancer disease CosMx 6,145 Source
32G77_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_2 Musculoskeletal Non-cancer disease CosMx 5,834 Source
32G77_3 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_3 Musculoskeletal Non-cancer disease CosMx 8,617 Source
32G77_4 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_4 Musculoskeletal Non-cancer disease CosMx 1,014 Source
32G77_5 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_5 Musculoskeletal Non-cancer disease CosMx 2,148 Source
399G0_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__399G0_1 Musculoskeletal Non-cancer disease CosMx 1,027 Source
399G0_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__399G0_2 Musculoskeletal Non-cancer disease CosMx 2,642 Source
G1532_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G1532_1 Musculoskeletal Non-cancer disease CosMx 2,553 Source
G1532_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G1532_2 Musculoskeletal Non-cancer disease CosMx 873 Source
G22G5_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_1 Musculoskeletal Non-cancer disease CosMx 6,016 Source
G22G5_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_2 Musculoskeletal Non-cancer disease CosMx 930 Source
G22G5_3 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_3 Musculoskeletal Non-cancer disease CosMx 1,228 Source
G22G5_4 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G22G5_4 Musculoskeletal Non-cancer disease CosMx 1,879 Source
G2697_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G2697_1 Musculoskeletal Non-cancer disease CosMx 2,705 Source
G2697_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G2697_2 Musculoskeletal Non-cancer disease CosMx 8,492 Source
G7G72_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_1 Musculoskeletal Non-cancer disease CosMx 11,906 Source
G7G72_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_2 Musculoskeletal Non-cancer disease CosMx 9,106 Source
G7G72_3 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_3 Musculoskeletal Non-cancer disease CosMx 8,559 Source
G7G72_4 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_4 Musculoskeletal Non-cancer disease CosMx 4,525 Source
G7G72_5 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_5 Musculoskeletal Non-cancer disease CosMx 24,368 Source