scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BrainTumor_36725935__IMC__Glioma_016C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,480 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_017C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,540 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_017C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,470 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_018C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,211 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_018C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,914 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_019C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,001 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_019C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,290 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_020C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,744 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_020C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,775 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_021C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,647 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_021C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,769 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_022C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,344 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_022C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,479 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_023C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,190 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_024C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,649 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_024C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,765 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_025C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,302 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_025C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,548 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_026C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,794 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_026C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,674 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_027C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,198 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_028C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,276 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_028C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,489 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_029C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,373 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_029C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,176 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_030C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,879 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_030C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,517 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_031C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,457 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_031C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,533 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_032C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,937 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_033C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,532 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_034C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,543 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_035C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,025 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_035C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,190 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_036C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,491 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_036C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,353 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_037C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,279 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_037C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,057 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_038C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,697 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_038C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,681 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_038C3 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,872 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_038C4 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,870 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_039C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,134 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_039C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,306 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_040C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,724 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_040C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,708 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_041C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,353 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_041C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,793 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_042C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,794 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_042C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,834 T1T2T3T1T2T3T1T2T3 Curated