scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BrainTumor_36725935__IMC__Glioma_119C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 981 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_119C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 933 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_120C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,176 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_120C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,730 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_121C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,616 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_122C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,528 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_122C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,873 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_123C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,906 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_123C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,586 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_123C3 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,790 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_124C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,543 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_124C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,469 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_125C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,776 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_125C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,824 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_126C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,687 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_126C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,493 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_127C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,600 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_128C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,339 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_128C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,018 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_128N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 845 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_129C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,117 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_129C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,019 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_130C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,355 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_130C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,753 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_131C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,307 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_131C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,450 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_132C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,669 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_132C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,893 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_133C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,827 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_134C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,806 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_134C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,604 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_135C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,379 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_135C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,072 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_136C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,156 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_137C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,092 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_137C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,062 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_138C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,861 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_138C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,445 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_139C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,533 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_139C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,850 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_0_X1Y1__gate106 BRCA_31959985 · IMC / Imaging Mass Cytometry Liver Healthy/control IMC 184 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_0_X2Y1__gate107 BRCA_31959985 · IMC / Imaging Mass Cytometry Liver Healthy/control IMC 1,914 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_100_X15Y5__gate014 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,558 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_101_X10Y8__gate055 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,433 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_104_X7Y4__gate064 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 490 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_104_X8Y4__gate069 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,841 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_104_X8Y4__gate101 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,046 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_106_X2Y9__gate123 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,423 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_112_X5Y8__gate118 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,927 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_114_X13Y4__gate005 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,706 T1T2T3T1T2T3T1T2T3 Curated