scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
NSCLC_40408481__PCF_CODEX__C_35 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,923 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_36 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,057 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_37 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,569 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_38 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,002 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_39 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,310 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_4 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,020 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_40 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,322 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_41 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,010 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_42 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,319 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_43 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,412 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_44 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,849 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_45 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,608 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_46 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,471 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_47 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,226 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_48 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,762 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_49 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,263 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_5 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,286 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_50 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,669 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_51 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,728 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_52 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,727 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_53 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,197 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_54 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 11,149 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_55 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,330 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_56 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,145 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_57 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,187 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_58 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,581 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_59 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,475 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_6 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,611 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_60 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,516 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_61 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,474 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_62 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,411 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_63 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,404 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_64 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,305 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_65 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 8,282 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_66 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,406 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_67 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,933 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_68 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,771 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_69 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,672 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_7 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,814 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_70 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,241 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_71 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,928 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_72 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 12,109 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_73 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,150 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_74 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,134 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_75 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,763 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_76 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,214 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_77 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 1,907 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_78 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,343 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_79 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,311 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_8 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,766 T1T2T3T1T2T3T1T2T3 Curated