scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
7,721 Samples
Search ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
NSCLC_40408481__PCF_CODEX__C_80 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,277 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_81 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,120 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_82 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,182 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_83 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,793 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_84 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,013 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_85 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,788 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_86 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 12,470 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_87 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 9,148 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_88 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,490 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_89 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 10,102 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_9 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 7,447 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_90 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 6,915 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_91 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,536 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_92 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 5,923 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_93 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,774 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_94 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,209 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_95 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,426 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_96 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 3,485 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_97 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 2,738 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_98 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,208 T1T2T3T1T2T3T1T2T3 Curated
NSCLC_40408481__PCF_CODEX__C_99 NSCLC_40408481 · PCF / CODEX / PhenoCycler Fusion Lung Primary cancer CODEX 4,883 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__1 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,741 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__10 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,295 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__11 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,131 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__12 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,313 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__13 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,207 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__14 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,688 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__15 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,248 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__16 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,156 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__17 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,336 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__18 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,278 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__19 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,212 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__2 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,949 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__20 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,935 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__21 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,965 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__22 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,684 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__23 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,878 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__24 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,440 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__25 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,523 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__26 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,061 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__27 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 10,090 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__28 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,056 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__29 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,215 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__3 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,902 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__30 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 10,574 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__31 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,437 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__32 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,787 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__33 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,622 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__34 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,561 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__35 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,268 T1T2T3T1T2T3T1T2T3 Curated