scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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7,761 Samples
Search ?Search uses keyword matching across catalog text fields. A matching record may contain the term in metadata such as dataset keys, titles, studies, organs, diseases, techniques, or identifiers, not only in the currently visible field.
Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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All records 7,761 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
OSCC_41707652__IMC__83 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,771 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__84 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,950 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__85 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,422 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__86 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 11,270 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__87 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,560 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__88 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,242 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__89 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,774 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__9 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 8,176 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__90 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 7,927 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__91 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,579 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__92 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 5,883 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__93 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 9,706 T1T2T3T1T2T3T1T2T3 Curated
OSCC_41707652__IMC__94 OSCC_41707652 · IMC / Imaging Mass Cytometry Head and neck Primary cancer IMC 6,751 T1T2T3T1T2T3T1T2T3 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 31,084 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,658 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 33,800 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 55,369 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 42,432 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 43,794 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_T6-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 12,473 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U1-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 24,894 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U2-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 34,334 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 15,019 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U4-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 47,432 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U4-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 46,798 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U5-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 74,793 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U6-a_1 PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 72,318 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U6-a_2 PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 68,410 Curated
PDAC_39227743__CosMx_SMI__PDAC_39227743_U7-a PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 70,885 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Distant_PDAC_Slide1_38 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 920 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Distant_PDAC_Slide1_39 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,086 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Distant_PDAC_Slide1_40 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 997 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_33 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 800 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_34 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 768 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_35 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 750 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_36 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 918 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_37 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 647 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Juxtalesional_PDAC_Slide1_44 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 734 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_28 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_29 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 758 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_30 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 423 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_31 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 256 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_32 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-1_Tumor_bed_PDAC_Slide1_45 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 565 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_25 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 0 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_26 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 308 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Distant_PDAC_Slide1_27 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 576 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_20 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,145 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_21 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 757 T1T2T3T1T2T3T1T2T3 Curated
PDAC_40269162__CosMx_SMI__Slide_1_Pt-8_LiM-2_Juxtalesional_PDAC_Slide1_22 PDAC_40269162 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 1,120 T1T2T3T1T2T3T1T2T3 Curated