scAtria single-cell spatial atlas resource

Browse

View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
Reset columns
All records 7,721 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
BRCA_35122013__IMC__MB-0500__core1__image234 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 76 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__H39 BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 75 T1T2T3T1T2T3T1T2T3
CRC_40189697__IMC__Cancer CR014_s0_a2_ac_full.tiff CRC_40189697 · IMC / Imaging Mass Cytometry Large intestine Primary cancer IMC 75 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0591__core1__image57 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 74 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_239_X12Y3__gate001 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 73 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0273__core1__image351 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 70 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0587__core1__image66 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 70 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_C4,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 69 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_282_X2Y3__gate087 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 68 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0251__core1__image478 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 68 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_6_X12Y1__gate174 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 67 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0558__core1__image365 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 67 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_A7,13 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 67 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0433__core1__image166 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 64 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_239_X11Y3__gate084 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_146_X16Y6__gate142 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0559__core1__image174 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 63 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_187_X4Y2__gate095 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 62 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0345__core1__image127 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 62 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0470__core1__image94 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 62 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_1 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 59 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP41_61_X4Y4__gate093 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 58 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_139 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 57 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_145_X2Y4__gate237 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 55 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__88_C5,2 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 55 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP42_275_X6Y4__gate208 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 53 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0228__core1__image176 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 53 T1T2T3T1T2T3T1T2T3
BRCA_31959985__IMC__BaselTMA_SP43_241_X8Y3__gate318 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 51 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_B7,11 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 51 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__H38 BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 49 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0634__core1__image58 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 49 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__178_A1,18 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 48 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0259__core1__image422 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 47 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0265__core1__image40 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 47 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__H14 BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 46 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0477__core1__image79 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 46 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0618__core1__image530 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 46 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0283__core1__image148 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 45 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0634__core1__image61 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 45 T1T2T3T1T2T3T1T2T3
CRC_41986711__CosMx_SMI__FOV_128 CRC_41986711 · CosMx SMI / NanoString SMI Large intestine Primary cancer CosMx 45 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0133__core1__image466 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 44 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0623__core1__image464 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 42 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__H33 BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 40 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0394__core1__image140 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 39 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0212__core1__image383 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 36 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__86_B6,8 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 36 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__H27 BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 32 T1T2T3T1T2T3T1T2T3
BoneMarrow_38714197__PCF_CODEX__H32 BoneMarrow_38714197 · PCF / CODEX / PhenoCycler Fusion Bone marrow Healthy/control CODEX 31 T1T2T3T1T2T3T1T2T3
BRCA_35122013__IMC__MB-0478__core1__image414 BRCA_35122013 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 31 T1T2T3T1T2T3T1T2T3
NSCLC_38242124__IMC__87_C7,15 NSCLC_38242124 · IMC / Imaging Mass Cytometry Lymph node metastasis Primary cancer IMC 31 T1T2T3T1T2T3T1T2T3