scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 1,099 matches · sample view
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Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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Organ: Breast × 1,099 matches 1,099 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
Atera_10xGenomics__Atera__WTA_Preview_FFPE_Breast_Cancer 10x Genomics Atera showcase Breast Primary cancer Atera 170,057 Curated
VisiumHD_p2_TissueArray__Visium_HD__Visium_HD_11mm_Human_TA_Breast_Cancer 10x Genomics Visium HD p2 TissueArray showcase Breast Primary cancer Visium HD 158,058 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C01 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 4,058 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C02 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,544 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C03 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 1,365 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C04 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,118 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C05 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,525 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R02_C06 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,077 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C01 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 4,203 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C02 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,125 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C03 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,655 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C04 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,869 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C05 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,582 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R03_C06 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 1,702 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C01 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,399 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C02 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,022 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C03 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,414 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C04 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 4,074 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C05 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 6,029 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R04_C06 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,785 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C01 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,704 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C02 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 387 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C03 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,573 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C04 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,965 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C05 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 6,549 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R05_C06 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,364 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C01 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 4,218 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C02 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,824 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C03 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,683 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C04 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 5,904 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C05 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 5,349 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R06_C06 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,884 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C01 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 4,181 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C02 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 3,357 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C03 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,299 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C04 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 1,720 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C05 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 2,324 T1T2T3T1T2T3T1T2T3 Curated
VisiumHD_p2_TMA__Visium_HD__Visium_HD_11mm_Human_Breast_Cancer_TMA_Core_R07_C06 10x Genomics Visium HD p2 TMA showcase Breast Primary cancer Visium HD 1,663 T1T2T3T1T2T3T1T2T3 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_FF_Human_Breast_Cancer 10x Genomics Visium HD showcase Breast Primary cancer Visium HD 38,993 T1T2T3T1T2T3T1T2T3 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fixed_Frozen 10x Genomics Visium HD showcase Breast Primary cancer Visium HD 439,422 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen 10x Genomics Visium HD showcase Breast Primary cancer Visium HD 159,301 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE 10x Genomics Xenium Prime 5K showcase Breast Primary cancer Xenium 699,110 Curated
BRCA_31959985__IMC__BaselTMA_SP41_100_X15Y5__gate014 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,558 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_101_X10Y8__gate055 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 3,433 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_104_X7Y4__gate064 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 490 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_104_X8Y4__gate069 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 1,841 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_104_X8Y4__gate101 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Healthy/control IMC 2,046 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_106_X2Y9__gate123 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,423 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_112_X5Y8__gate118 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,927 T1T2T3T1T2T3T1T2T3 Curated
BRCA_31959985__IMC__BaselTMA_SP41_114_X13Y4__gate005 BRCA_31959985 · IMC / Imaging Mass Cytometry Breast Primary cancer IMC 2,706 T1T2T3T1T2T3T1T2T3 Curated