scAtria single-cell spatial atlas resource

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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Sample Organ Disease state Technique Cells Spatial module Curation
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV19 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 2,355 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV2 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,864 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV20 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 3,271 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV21 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Healthy/control CosMx 5,165 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV3 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 3,697 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV4 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 5,284 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV5 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,446 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV6 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 6,271 T1T2T3T1T2T3T1T2T3 Curated
UlcerativeColitisRun1_38374043__CosMx_SMI__Run1__FOV9 UlcerativeColitis_38374043 CosMx 960-plex Run 1 Large intestine Non-cancer disease CosMx 4,192 T1T2T3T1T2T3T1T2T3 Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Alzheimers_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Healthy/control Xenium 44,955 Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Glioblastoma_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Primary cancer Xenium 40,887 Curated
XeniumBrain_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Brain_Healthy_With_Addon Xenium Human Brain Gene Expression Panel showcase Brain Non-cancer disease Xenium 24,406 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 574,852 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_1 Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 892,966 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_Big_2 Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 885,523 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_IDC_With_Addon Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 576,963 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 356,746 Curated
XeniumBreast_10xGenomics__Xenium__Xenium_V1_FFPE_Human_Breast_ILC_With_Addon Xenium Human Breast Gene Expression Panel 10x Genomics showcase Breast Primary cancer Xenium 365,604 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 254,480 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 375,529 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S1_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 209,467 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 358,519 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 380,739 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S2_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Healthy/control Xenium 301,854 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 150,145 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 373,150 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S3_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 308,531 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Bot Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 201,955 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Mid Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 335,709 Curated
XeniumBreastJanesick_10xGenomics__Xenium__Human_Breast_Biomarkers_S4_Top Xenium Human Breast Gene Expression Panel bioRxiv biomarker showcase Breast Primary cancer Xenium 192,898 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Brain_GBM_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Brain Primary cancer Xenium 816,769 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Colorectal_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Large intestine Primary cancer Xenium 388,175 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ductal_Adenocarcinoma_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Pancreas Primary cancer Xenium 235,099 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Lung Primary cancer Xenium 161,000 Curated
XeniumImmune_10xGenomics__Xenium__Xenium_V1_Human_Ovarian_Cancer_Addon_FFPE Xenium Human Immuno-Oncology Profiling Panel showcase Ovary Primary cancer Xenium 247,636 Curated
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Lung_Cancer_With_Add_on_2_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 531,165 Curated
XeniumLung_10xGenomics__Xenium__Xenium_Preview_Human_Non_diseased_Lung_With_Add_on_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Healthy/control Xenium 295,883 Curated
XeniumLung_10xGenomics__Xenium__Xenium_V1_Human_Lung_Cancer_FFPE Xenium Human Lung Gene Expression Panel showcase Lung Primary cancer Xenium 278,659 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBone_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Musculoskeletal Healthy/control Xenium 33,801 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_acute_lymphoid_leukemia_section Xenium Human Multi-Tissue and Cancer Panel showcase Bone marrow Primary cancer Xenium 225,906 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hBoneMarrow_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Bone marrow Healthy/control Xenium 84,518 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hHeart_nondiseased_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Heart Healthy/control Xenium 26,366 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hKidney_cancer_section Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Primary cancer Xenium 56,510 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hKidney_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Kidney Healthy/control Xenium 97,560 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_cancer_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Primary cancer Xenium 162,628 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLiver_nondiseased_section_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Liver Healthy/control Xenium 239,271 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLung_cancer_section Xenium Human Multi-Tissue and Cancer Panel showcase Lung Primary cancer Xenium 150,365 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hLymphNode_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Lymphoid tissue Healthy/control Xenium 377,985 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hPancreas_Cancer_Add_on_FFPE Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Primary cancer Xenium 190,965 Curated
XeniumMulti_10xGenomics__Xenium__Xenium_V1_hPancreas_nondiseased_section Xenium Human Multi-Tissue and Cancer Panel showcase Pancreas Healthy/control Xenium 103,901 Curated