scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 6
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available.
GSM9625562_A1R6 MIBC_42126225 · Xenium MIBC_42126225__Xenium__GSM9625562_A1R6 Bladder Primary cancer Xenium 16,587
GSM5910308_Panel3_CW20053A-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910308_Panel3_CW20053A-2_ii Brain Non-cancer disease MERFISH 16,419
Oral_41663813__Xenium__Oral_41663813_P9c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 16,249
Melanoma_40457060__CosMx_SMI__Tumor_1 Melanoma_40457060 · CosMx SMI / NanoString SMI Skin Primary cancer CosMx 16,214
GSM5910283_Panel1_CW60040F-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910283_Panel1_CW60040F-1_i Brain Non-cancer disease MERFISH 16,178
Oral_41663813__Xenium__Oral_41663813_P15 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 15,682
GSM5910298_Panel2_CW20047D-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910298_Panel2_CW20047D-3_i Brain Non-cancer disease MERFISH 15,543
GSM5910297_Panel2_CW20053A-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910297_Panel2_CW20053A-2_i Brain Non-cancer disease MERFISH 15,542
Oral_41663813__Xenium__Oral_41663813_P10 Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 15,455
GSM7709904_Panel1_CW60228D-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709904_Panel1_CW60228D-1_i Brain Non-cancer disease MERFISH 15,182
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P6_Pre_slide_4 Lung Metastatic cancer CosMx 15,046
PDAC_39227743__CosMx_SMI__PDAC_39227743_U3-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 15,019
GSM5910317_Panel4_CW20012E-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910317_Panel4_CW20012E-2_ii Brain Non-cancer disease MERFISH 14,849
GSM5910287_Panel1_CW60219E-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910287_Panel1_CW60219E-1_i Brain Non-cancer disease MERFISH 14,837
Oral_41663813__Xenium__Oral_41663813_H2a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 14,819
GSM5910309_Panel3_CW20053A-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910309_Panel3_CW20053A-2_ii Brain Non-cancer disease MERFISH 14,805
GSM5910323_Panel4_CW60220F-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910323_Panel4_CW60220F-4_i Brain Non-cancer disease MERFISH 14,373
Oral_41663813__Xenium__Oral_41663813_H4a Oral_41663813 · Xenium Head and neck Healthy/control Xenium 13,955
GSM5910302_Panel3_CW20012E-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910302_Panel3_CW20012E-2_i Brain Non-cancer disease MERFISH 13,636
GSM8876958_slide_9 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P6_On_slide_9 Lung Metastatic cancer CosMx 13,361
6 pcw selected area DevelopingLung_39477961 · PCF / CODEX / PhenoCycler Fusion DevelopingLung_39477961__PCF_CODEX__6w_selectedarea Lung Healthy/control CODEX 13,167
GSM5910303_Panel3_CW20041A-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910303_Panel3_CW20041A-2_i Brain Non-cancer disease MERFISH 13,004
GSM5910293_Panel2_CW60230E-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910293_Panel2_CW60230E-4_i Brain Non-cancer disease MERFISH 12,972
GSM5910321_Panel4_CW20053A-2_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910321_Panel4_CW20053A-2_ii Brain Non-cancer disease MERFISH 12,854
Oral_41663813__Xenium__Oral_41663813_P12a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 12,788
GBM_40972572__CosMx_SMI_protein__UM07-R GBM_40972572 · CosMx SMI Protein Brain Primary cancer CosMx-P 12,591
PDAC_39227743__CosMx_SMI__PDAC_39227743_T6-b PDAC_39227743 · CosMx SMI / NanoString SMI Pancreas Primary cancer CosMx 12,473
GSM5910320_Panel4_CW20053A-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910320_Panel4_CW20053A-2_i Brain Non-cancer disease MERFISH 12,325
Oral_41663813__Xenium__Oral_41663813_P7b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 12,222
G7G72_1 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_1 Musculoskeletal Non-cancer disease CosMx 11,906
GSM8876955_slide_6 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P1_On_slide_6 Liver Metastatic cancer CosMx 11,693
GSM7709906_Panel1_CW60109C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709906_Panel1_CW60109C-1_i Brain Non-cancer disease MERFISH 11,635
GSM7709901_Panel1_CW20324C-1_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709901_Panel1_CW20324C-1_i Brain Non-cancer disease MERFISH 11,540
GSM8876958_slide_9 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P7_Pre_slide_9 Peritoneum Metastatic cancer CosMx 10,605
GSM5910316_Panel4_CW60220F-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910316_Panel4_CW60220F-3_i Brain Non-cancer disease MERFISH 10,538
Oral_41663813__Xenium__Oral_41663813_P5b Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 10,503
GSM7709893_Panel1_CW20047D-1_ii ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709893_Panel1_CW20047D-1_ii Brain Non-cancer disease MERFISH 10,126
GSM5910319_Panel4_CW20041A-2_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910319_Panel4_CW20041A-2_i Brain Non-cancer disease MERFISH 9,998
Oral_41663813__Xenium__Oral_41663813_H7b Oral_41663813 · Xenium Head and neck Healthy/control Xenium 9,998
Oral_41663813__Xenium__Oral_41663813_P7a Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 9,388
Oral_41663813__Xenium__Oral_41663813_P13c Oral_41663813 · Xenium Head and neck Non-cancer disease Xenium 9,146
G7G72_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_2 Musculoskeletal Non-cancer disease CosMx 9,106
GSM8876950_slide_1 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P6_On_slide_1 Lung Metastatic cancer CosMx 8,765
GSM7709894_Panel1_CW60218E-3_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM7709894_Panel1_CW60218E-3_i Brain Non-cancer disease MERFISH 8,666
32G77_3 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__32G77_3 Musculoskeletal Non-cancer disease CosMx 8,617
G7G72_3 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G7G72_3 Musculoskeletal Non-cancer disease CosMx 8,559
G2697_2 RheumatoidArthritis_39609125 · CosMx SMI / NanoString SMI RheumatoidArthritis_39609125__CosMx_SMI__G2697_2 Musculoskeletal Non-cancer disease CosMx 8,492
GSM8876953_slide_4 CRC_42167227 · CosMx SMI / NanoString SMI CRC_42167227__CosMx_SMI__P1_Pre_slide_4 Liver Metastatic cancer CosMx 8,183
GSM5910300_Panel3_CW60040F-5_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910300_Panel3_CW60040F-5_i Brain Non-cancer disease MERFISH 8,181
GSM5910304_Panel3_CW20047D-4_i ASD_42288509 · MERFISH / MERSCOPE ASD_42288509__MERFISH__GSM5910304_Panel3_CW20047D-4_i Brain Non-cancer disease MERFISH 7,955