scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
Dataset Sample
View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
Card Table
Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 7,721 matches · sample view
Customized columns 7
Sample table columns Selections persist in the URL and manifest download.
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All records 7,721 matches 7,508 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
BrainTumor_36725935__IMC__Glioma_073C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,206 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_073C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,954 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_074C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,105 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_075C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,180 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_075C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 922 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_076C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,205 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_076C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,904 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_077C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,240 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_077C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,554 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_078C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,920 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_078C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,201 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_079C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,707 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_079C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,692 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_080C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,733 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_080C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,201 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_081C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,343 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_081C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,982 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_082C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,501 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_082C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,446 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_082N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,520 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_083C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,155 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_083C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,580 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_083N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 985 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_084C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,619 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_084C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,190 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_084N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 833 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_085C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,879 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_085C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,196 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_085N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,265 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_086C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,787 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_086C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,346 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_086N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 731 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_087C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,184 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_087C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,427 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_087C3 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,141 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_088C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,275 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_088C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 5,037 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_088N BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 893 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_089C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,293 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_090C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,875 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_090C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,546 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_091C BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,823 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_092C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,032 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_092C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 3,320 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_093C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,868 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_093C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,998 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_094C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 6,176 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_094C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 4,814 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_095C1 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 1,465 T1T2T3T1T2T3T1T2T3 Curated
BrainTumor_36725935__IMC__Glioma_095C2 BrainTumor_36725935 · IMC / Imaging Mass Cytometry Brain Primary cancer IMC 2,639 T1T2T3T1T2T3T1T2T3 Curated