scAtria single-cell spatial atlas resource

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View by ?Dataset view shows one row per deployed dataset. Sample view shows one row per sample and is better for organ, disease, and spatial availability checks.
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View mode ?Cards are for quick scanning. Tables are denser and better for comparison, sorting, and column customization.
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Search ?Search is user-initiated: type one keyword or several comma-separated keywords, then click Search keyword. Commas search alternatives, for example breast cancer, HNSCC, Xenium.
Filter scope 1,768 matches · sample view
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Customized columns 7
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Modality: Spatial transcriptomics × 1,768 matches 1,564 curated Download sample CSV
Sample Organ Disease state ?Broad public sample state used for filtering and comparison. Technique Cells ?Number of individually resolved single-cell observations included for the record. Spatial module ?D, I, and T indicate Domains, Interaction, and Topology outputs. Tier badges show ready ontology levels when detailed availability is available. Curation ?Curated records have standardized ontology labels and normalized metadata. Source records are ingested but not fully standardized yet.
DKD_42056516__CosMx_SMI__HK3624 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Healthy/control CosMx 68,420 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__CosMx_SMI__HK3626 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Healthy/control CosMx 54,046 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__CosMx_SMI__HK3631 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Non-cancer disease CosMx 68,106 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__CosMx_SMI__HK3647 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Non-cancer disease CosMx 85,374 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__CosMx_SMI__Pediatric1 DKD_42056516 · CosMx SMI / NanoString SMI Kidney Healthy/control CosMx 229,669 Curated
DKD_42056516__Xenium__1001 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 29,126 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1003 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 30,772 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1004 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 24,449 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1005 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 17,937 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1006 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 45,609 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1007 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 41,336 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1008 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 27,912 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1009 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 10,167 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1010 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 40,475 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1011 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 27,876 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1012 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 39,105 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__1013 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 28,261 T1T2T3T1T2T3T1T2T3 Curated
DKD_42056516__Xenium__HK2695 DKD_42056516 · Xenium Kidney Non-cancer disease Xenium 151,101 Curated
DKD_42056516__Xenium__HK2753 DKD_42056516 · Xenium Kidney Healthy/control Xenium 161,350 Curated
DKD_42056516__Xenium__HK3106 DKD_42056516 · Xenium Kidney Healthy/control Xenium 171,526 Curated
DKD_42056516__Xenium__HK3626 DKD_42056516 · Xenium Kidney Healthy/control Xenium 104,038 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c02_FOV1 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 2,930 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c03_FOV2 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,537 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c05_FOV3 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,686 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_C06_FOV4 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,617 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c09_FOV5 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,078 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c10_FOV6 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 2,551 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c11_FOV7 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,714 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c12_FOV8 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,473 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c14_FOV9 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 2,341 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c17_FOV10 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,663 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c18_FOV11 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,361 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c21_FOV12 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 2,569 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c23_FOV13 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,464 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c23_FOV14 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,581 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c24_FOV15 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,266 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c24_FOV16 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,219 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c26_FOV17 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,999 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c27_FOV18 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 2,246 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c27_FOV19 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 2,375 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c28_FOV20 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 1,965 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c28_FOV21 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 2,303 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c29_FOV22 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,162 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c31_FOV23 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,498 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c31_FOV24 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,603 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c32_FOV25 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,589 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c32_FOV26 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,844 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c33_FOV27 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 4,362 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c34_FOV28 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 3,795 T1T2T3T1T2T3T1T2T3 Curated
DLBCL_41874448__CosMx_SMI__DLBCL_41874448_DFCI_c41_FOV30 DLBCL_41874448 · CosMx SMI / NanoString SMI Lymphoid tissue Primary cancer CosMx 2,511 T1T2T3T1T2T3T1T2T3 Curated