scAtria single-cell spatial atlas resource

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1,777 Samples
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Examples Study ID HNSCC_41616773 Modality Spatial transcriptomics Technique Xenium Organ breast Disease state primary cancer Disease detail breast cancer
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Modality: Spatial transcriptomics × 1,777 matches 1,564 curated Download sample CSV
Sample Organ Disease state Technique Cells Spatial module Curation
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Breast_Cancer_Fresh_Frozen 10x Genomics Visium HD showcase Breast Primary cancer Visium HD 159,301 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 220,703 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P1 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 217,921 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Cancer_P5 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 151,153 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P3 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 75,410 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Colon_Normal_P5 10x Genomics Visium HD showcase Large intestine Primary cancer Visium HD 138,127 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Kidney_FFPE 10x Genomics Visium HD showcase Kidney Healthy/control Visium HD 148,056 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_Fixed_Frozen 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 285,367 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment1 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 149,347 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_HD_Only_Experiment2 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 165,128 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_Prime_5K_Experiment2 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 155,513 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lung_Cancer_post_Xenium_v1_Experiment1 10x Genomics Visium HD showcase Lung Primary cancer Visium HD 159,463 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Lymph_Node_FFPE 10x Genomics Visium HD showcase Lymphoid tissue Healthy/control Visium HD 300,211 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF 10x Genomics Visium HD showcase Ovary Primary cancer Visium HD 183,450 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Ovarian_Cancer_FF_Min_Depth 10x Genomics Visium HD showcase Ovary Primary cancer Visium HD 183,449 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Pancreas 10x Genomics Visium HD showcase Pancreas Healthy/control Visium HD 50,897 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Prostate_Cancer_FFPE 10x Genomics Visium HD showcase Prostate Primary cancer Visium HD 227,257 Curated
Visium_HD_10xGenomics__Visium_HD__Visium_HD_Human_Tonsil_Fresh_Frozen 10x Genomics Visium HD showcase Lymphoid tissue Healthy/control Visium HD 959,759 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Breast_Cancer_FFPE 10x Genomics Xenium Prime 5K showcase Breast Primary cancer Xenium 699,110 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Cervical_Cancer_FFPE 10x Genomics Xenium Prime 5K showcase Uterus/Cervix Primary cancer Xenium 840,387 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lung_Cancer_FFPE 10x Genomics Xenium Prime 5K showcase Lung Primary cancer Xenium 278,328 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Lymph_Node_Reactive_FFPE 10x Genomics Xenium Prime 5K showcase Lymphoid tissue Non-cancer disease Xenium 708,983 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_Cancer_FF 10x Genomics Xenium Prime 5K showcase Ovary Primary cancer Xenium 200,900 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Ovary_FF 10x Genomics Xenium Prime 5K showcase Ovary Primary cancer Xenium 1,157,659 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Prostate_FFPE 10x Genomics Xenium Prime 5K showcase Prostate Primary cancer Xenium 193,000 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Human_Skin_FFPE 10x Genomics Xenium Prime 5K showcase Skin Primary cancer Xenium 112,551 Curated
Xenium5k_10xGenomics__Xenium__Xenium_Prime_Ovarian_Cancer_FFPE_XRrun 10x Genomics Xenium Prime 5K showcase Ovary Primary cancer Xenium 407,124 Curated
CosMx1k_Bruker__CosMx_SMI__CosMxLiver1k_Bruker__CancerousLiver Bruker CosMx 1k FFPE showcase Liver Primary cancer CosMx 460,441 Curated
CosMx1k_Bruker__CosMx_SMI__CosMxLiver1k_Bruker__NormalLiver Bruker CosMx 1k FFPE showcase Liver Healthy/control CosMx 332,877 Curated
CosMx6k_Bruker__CosMx_SMI__CosMxFrontalCortex6k_Bruker Bruker CosMx 6k FFPE showcase Brain Healthy/control CosMx 188,686 Curated
CosMx6k_Bruker__CosMx_SMI__CosMxLymphNode6k_Bruker Bruker CosMx 6k FFPE showcase Lymphoid tissue Healthy/control CosMx 1,852,946 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxBreastCancerMultiWTx_Bruker Bruker CosMx WTx FFPE showcase Breast Primary cancer CosMx 152,451 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxBreastCancerWTx_Bruker Bruker CosMx WTx FFPE showcase Breast Primary cancer CosMx 645,251 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxColonCancerWTx_Bruker Bruker CosMx WTx FFPE showcase Large intestine Primary cancer CosMx 493,834 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxHippocampusWTx_Bruker Bruker CosMx WTx FFPE showcase Brain Healthy/control CosMx 131,568 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxKidneyCancerWTx_Bruker Bruker CosMx WTx FFPE showcase Kidney Primary cancer CosMx 436,787 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxPancreasSmallWTxDown_Bruker Bruker CosMx WTx FFPE showcase Pancreas Healthy/control CosMx 25,304 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxPancreasSmallWTxUp_Bruker Bruker CosMx WTx FFPE showcase Pancreas Healthy/control CosMx 23,640 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxPancreasWTx_Bruker Bruker CosMx WTx FFPE showcase Pancreas Healthy/control CosMx 413,373 Curated
CosMxWTx_Bruker__CosMx_SMI__CosMxSkinCancerWTx_Bruker Bruker CosMx WTx FFPE showcase Skin Primary cancer CosMx 555,820 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core1 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 82,298 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core10 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 1,093 T1T2T3T1T2T3T1T2T3 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core11 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 1,494 T1T2T3T1T2T3T1T2T3 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core12 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 7,974 T1T2T3T1T2T3T1T2T3 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core13 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 98,317 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core14 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 102,672 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core15 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 10,266 T1T2T3T1T2T3T1T2T3 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core16 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 119,079 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core17 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 111,967 Curated
CastlemanDisease_40593805__Xenium__xenium_dat__Core18 CastlemanDisease_40593805 · Xenium Lymphoid tissue Non-cancer disease Xenium 71,612 Curated